Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00639 ATGGAATTGAGAAGAGGCGGCTATGTGGGTGGTTTAGTGATTCTCCTCTGTGCATTGGCAATTGTGAAGTCAGAGGGCAGGAGGAAGACGTTAGAAATGGTTATCGCCAATGCCGCCGATTGCCATTTCACATCCTCAGAGTTGGAAGGAGCTATGGGCGAGAAGGCATGCACGAAACAATTTGTTCCTTCCATCCAGAAAGAAATCATGGATAAATCTATAGCAATTCTACCTCCTGAAATGAAACATGGCTTGTTGGATTGTTTAAAAAAGAAAAGTATGTTTTCTCGTGATTCTGAACTTAGTCCTCCTAGCTTATCTGATTGGGTTAGGAGATCAATTGAGTTCATTTTCGTAGGGTCCAATATTCACATGAGACAATTAATTAGATTGTTTCAAGGTTCATCACCACCGCACCCTACTGCAGCTCCAGCTCCGTCTCCTGATGCAGAATCACCGGCTAATTCTCCATTACTGTCTCCCATTCATGCTCCAATGTTGTCGCCAAGTAATGCACCAACCAATTCTCCTACTGTTGTGGCCCCGGCGCCGTCGCCAGAACTGCTACCGCCAGTGGGCGACACTGATGTTTTGGATTCACCTCCATCTACTGTAGCTCGCTCACCACCTCTTCCACGAGCTTCTCCCAAGTCTCGCCCGCCAAAGAAGCATGAAGAAAGCCGGACGGGCATAATTGCTGGTATTGTAGCAGCTGGTGTGGGAATTGTTCTTGTGGTTGCGCTGGTTTTGTTCTGCTGTCGTAGAGGTAAGGGAAGCAAGGTTGAGCCGAAGGATGGGCAAAAGAATGAGAAGCCTTTAAACAACATATCTTTGAGTGAATTACCAGCAGGTTCTTCACTGAAGGCATACAGCGATGGAAATCCAGCAACCAACGAGTTCAACGCTAATAATGGAACTAAACCACCACCCTCTTTTGTTGGCAACTTAGCAGTGAATCCTGAAAACCGTACCTATATTGCTGAGGGTCCAACATCTGATGGTAAATCATCAGCAATGCCGCCTCTAAAACCCCCTCCTGAAAGACCAGATGCTCAGCCTCCTCCTCCAACAGCACCTGATGCAGCACCTCCACCCCCTCCGCCTGCATCCAGAGCTCCACCACCATCACCCCCGAAAGTTTCTCGGCCCCCACCTGCACCACCGGCGGCAATCCCTGGTAAACCTCAAGCACCACCTGTGGCGCCACATCAGGGTGGACCCAATGGCTCAAGTATGGATCCTGATTCATTAGGCCATAAAACCAAGTTAAAGCCCTTTTTCTGGGATAAGGTTCTTGCCAACCCTGGACAATCCATGGTCTGGCACGAGATTAGTGATGGATCATTCCAATTCAATGAGGAGATGATGGAGTCCTTGTTTGGATATGCAGCAGTGGAAGCTAACAAAGGCAACCGCAAGAAAGATTTAGCTTCGGAACCTTCAGTACAGTACATTCAAATCATCGACCCTAGGAAAGCTCAAAACCTTTCAATTCTCTTACGGGCACTGAATGTGACAACAGAAGAAGTTATGGATGCCATTCAACAAGGAAATCCTGATCTTCCAGCAGAGCTTATGCAGACCTTGTTGAAGATGGCACCAACAGCAGAAGAGGAGCTGAAACTGAGATTATATTCAGGGGACCTTTCTCAGCTAGGGCCAGCAGAACGGTTCCTGAAGGTGTTGGTGAACGTTCCTTTTGCTTTTAAACGATTGGAGTGCCTTCTCTTCATGCTCTCATTGACGGAAGACGTCGCTAGCATTAAGGAGTCGTTTGCTACGCTACAGGTCGCCTGCAAAAATCTTAGAAACAGCAGGCTATTTTTCAAGCTACTAGAAGCAGTTCTCAAAACTGGCAATCGTATGAATGTCGGGACGTACCGTGGCGGTGCTCAGGCGTTCAAGCTCGATACGCTCTTGAAACTGGCGGATGTTAAGGGAACCGACGGCAAAACTTCGCTCTTACACTTTGTCGTACAGGAGATTATTCGTTCGGAGGGCAGTCGAGCAGCCCGCTCTAATAGACATAGCCGGAGTTCGTCCAGTATAGTTTCCAGCGTTACGGTTTCCGAAGACGTCGTCGACGGTTCTGTGGAACATCATCGGCGATTAGGTCTTCAGGTCGTTTCTGGTTTGAGCACGGAGCTCCAGGACGTTAAAAGAGCGGCCGCCATAGATGCGGAAGGGCTAACGAAGACGATCTCGAAACTCGGCCAGTCTTTGCTTAGAACCAAAGGATTTATAAACGCGGAGATGGAAAGTTTGGACGAAGACAGCAAATTCCACCAATCGGTGTCGAAATTTGTGGAAGGAGCAGAAGCGGACATTTCGTGGATTGCAGGGGAAGAAAAGAGGATAATGGCACTGGTGAAGAGAACGGTGGATTACTTCCATGGAAATTCTGGAAAGGACGAAGGATTGCGATTGTTCACGATCGTACGCGATTTCCTAATTGTGTTAGACAAGACCTGTCAAGAGGTCGAAGAAGAAGCTGCAGCTGCGGCAAAGCAAGCGAAGAATTCCAAAAAAGAAACTCCAACATCGTCGCAGCAGAATTCAGATCTACAGCAGCGGCTATTTCCAGCGATTGCAGAACGCCGGGTGGGCGAGGACTCAAGTTCTTCGGACGACGACGATGGCAAGAGTTCATCATAA 2655 48.21 MELRRGGYVGGLVILLCALAIVKSEGRRKTLEMVIANAADCHFTSSELEGAMGEKACTKQFVPSIQKEIMDKSIAILPPEMKHGLLDCLKKKSMFSRDSELSPPSLSDWVRRSIEFIFVGSNIHMRQLIRLFQGSSPPHPTAAPAPSPDAESPANSPLLSPIHAPMLSPSNAPTNSPTVVAPAPSPELLPPVGDTDVLDSPPSTVARSPPLPRASPKSRPPKKHEESRTGIIAGIVAAGVGIVLVVALVLFCCRRGKGSKVEPKDGQKNEKPLNNISLSELPAGSSLKAYSDGNPATNEFNANNGTKPPPSFVGNLAVNPENRTYIAEGPTSDGKSSAMPPLKPPPERPDAQPPPPTAPDAAPPPPPPASRAPPPSPPKVSRPPPAPPAAIPGKPQAPPVAPHQGGPNGSSMDPDSLGHKTKLKPFFWDKVLANPGQSMVWHEISDGSFQFNEEMMESLFGYAAVEANKGNRKKDLASEPSVQYIQIIDPRKAQNLSILLRALNVTTEEVMDAIQQGNPDLPAELMQTLLKMAPTAEEELKLRLYSGDLSQLGPAERFLKVLVNVPFAFKRLECLLFMLSLTEDVASIKESFATLQVACKNLRNSRLFFKLLEAVLKTGNRMNVGTYRGGAQAFKLDTLLKLADVKGTDGKTSLLHFVVQEIIRSEGSRAARSNRHSRSSSSIVSSVTVSEDVVDGSVEHHRRLGLQVVSGLSTELQDVKRAAAIDAEGLTKTISKLGQSLLRTKGFINAEMESLDEDSKFHQSVSKFVEGAEADISWIAGEEKRIMALVKRTVDYFHGNSGKDEGLRLFTIVRDFLIVLDKTCQEVEEEAAAAAKQAKNSKKETPTSSQQNSDLQQRLFPAIAERRVGEDSSSSDDDDGKSSS 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2975163 2978312 + CmaCh20G006390.1 Cma20g00639 316453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00639 884 MobiDBLite consensus disorder prediction 257 418 - -
Cma20g00639 884 PANTHER FORMIN-RELATED 3 877 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma20g00639 884 PANTHER FORMIN-LIKE PROTEIN 3 3 877 - -
Cma20g00639 884 Coils Coil 824 844 - -
Cma20g00639 884 ProSiteProfiles Formin homology-2 (FH2) domain profile. 413 846 IPR015425 -
Cma20g00639 884 SUPERFAMILY Formin homology 2 domain (FH2 domain) 363 837 - -
Cma20g00639 884 MobiDBLite consensus disorder prediction 869 884 - -
Cma20g00639 884 MobiDBLite consensus disorder prediction 831 884 - -
Cma20g00639 884 Pfam Formin Homology 2 Domain 419 819 IPR015425 -
Cma20g00639 884 MobiDBLite consensus disorder prediction 270 310 - -
Cma20g00639 884 MobiDBLite consensus disorder prediction 134 226 - -
Cma20g00639 884 Gene3D Formin, FH2 domain 433 859 IPR042201 -
Cma20g00639 884 MobiDBLite consensus disorder prediction 339 402 - -
Cma20g00639 884 SMART it6_source 413 835 IPR015425 -
Cma20g00639 884 MobiDBLite consensus disorder prediction 840 858 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00145 Cma20g00639 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01113 Cma-Chr10:7607891 Cma20g00639 Cma-Chr20:2975163 2.07E-104 dispersed
Cma01g01155 Cma-Chr1:8438441 Cma20g00639 Cma-Chr20:2975163 1.71E-175 wgd
Cma02g00145 Cma-Chr2:691274 Cma20g00639 Cma-Chr20:2975163 0 wgd
Cma20g00639 Cma-Chr20:2975163 Cma09g00921 Cma-Chr9:4588568 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00639 - - cmos:111449007 1414.44