Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00639 ATGGAATTGAGAAGAGGCGGCTATGTGGGTGGTTTAGTGATTCTCCTCTGTGCATTGGCAATTGTGAAGTCAGAGGGCAGGAGGAAGACGTTAGAAATGGTTATCGCCAATGCCGCCGATTGCCATTTCACATCCTCAGAGTTGGAAGGAGCTATGGGCGAGAAGGCATGCACGAAACAATTTGTTCCTTCCATCCAGAAAGAAATCATGGATAAATCTATAGCAATTCTACCTCCTGAAATGAAACATGGCTTGTTGGATTGTTTAAAAAAGAAAAGTATGTTTTCTCGTGATTCTGAACTTAGTCCTCCTAGCTTATCTGATTGGGTTAGGAGATCAATTGAGTTCATTTTCGTAGGGTCCAATATTCACATGAGACAATTAATTAGATTGTTTCAAGGTTCATCACCACCGCACCCTACTGCAGCTCCAGCTCCGTCTCCTGATGCAGAATCACCGGCTAATTCTCCATTACTGTCTCCCATTCATGCTCCAATGTTGTCGCCAAGTAATGCACCAACCAATTCTCCTACTGTTGTGGCCCCGGCGCCGTCGCCAGAACTGCTACCGCCAGTGGGCGACACTGATGTTTTGGATTCACCTCCATCTACTGTAGCTCGCTCACCACCTCTTCCACGAGCTTCTCCCAAGTCTCGCCCGCCAAAGAAGCATGAAGAAAGCCGGACGGGCATAATTGCTGGTATTGTAGCAGCTGGTGTGGGAATTGTTCTTGTGGTTGCGCTGGTTTTGTTCTGCTGTCGTAGAGGTAAGGGAAGCAAGGTTGAGCCGAAGGATGGGCAAAAGAATGAGAAGCCTTTAAACAACATATCTTTGAGTGAATTACCAGCAGGTTCTTCACTGAAGGCATACAGCGATGGAAATCCAGCAACCAACGAGTTCAACGCTAATAATGGAACTAAACCACCACCCTCTTTTGTTGGCAACTTAGCAGTGAATCCTGAAAACCGTACCTATATTGCTGAGGGTCCAACATCTGATGGTAAATCATCAGCAATGCCGCCTCTAAAACCCCCTCCTGAAAGACCAGATGCTCAGCCTCCTCCTCCAACAGCACCTGATGCAGCACCTCCACCCCCTCCGCCTGCATCCAGAGCTCCACCACCATCACCCCCGAAAGTTTCTCGGCCCCCACCTGCACCACCGGCGGCAATCCCTGGTAAACCTCAAGCACCACCTGTGGCGCCACATCAGGGTGGACCCAATGGCTCAAGTATGGATCCTGATTCATTAGGCCATAAAACCAAGTTAAAGCCCTTTTTCTGGGATAAGGTTCTTGCCAACCCTGGACAATCCATGGTCTGGCACGAGATTAGTGATGGATCATTCCAATTCAATGAGGAGATGATGGAGTCCTTGTTTGGATATGCAGCAGTGGAAGCTAACAAAGGCAACCGCAAGAAAGATTTAGCTTCGGAACCTTCAGTACAGTACATTCAAATCATCGACCCTAGGAAAGCTCAAAACCTTTCAATTCTCTTACGGGCACTGAATGTGACAACAGAAGAAGTTATGGATGCCATTCAACAAGGAAATCCTGATCTTCCAGCAGAGCTTATGCAGACCTTGTTGAAGATGGCACCAACAGCAGAAGAGGAGCTGAAACTGAGATTATATTCAGGGGACCTTTCTCAGCTAGGGCCAGCAGAACGGTTCCTGAAGGTGTTGGTGAACGTTCCTTTTGCTTTTAAACGATTGGAGTGCCTTCTCTTCATGCTCTCATTGACGGAAGACGTCGCTAGCATTAAGGAGTCGTTTGCTACGCTACAGGTCGCCTGCAAAAATCTTAGAAACAGCAGGCTATTTTTCAAGCTACTAGAAGCAGTTCTCAAAACTGGCAATCGTATGAATGTCGGGACGTACCGTGGCGGTGCTCAGGCGTTCAAGCTCGATACGCTCTTGAAACTGGCGGATGTTAAGGGAACCGACGGCAAAACTTCGCTCTTACACTTTGTCGTACAGGAGATTATTCGTTCGGAGGGCAGTCGAGCAGCCCGCTCTAATAGACATAGCCGGAGTTCGTCCAGTATAGTTTCCAGCGTTACGGTTTCCGAAGACGTCGTCGACGGTTCTGTGGAACATCATCGGCGATTAGGTCTTCAGGTCGTTTCTGGTTTGAGCACGGAGCTCCAGGACGTTAAAAGAGCGGCCGCCATAGATGCGGAAGGGCTAACGAAGACGATCTCGAAACTCGGCCAGTCTTTGCTTAGAACCAAAGGATTTATAAACGCGGAGATGGAAAGTTTGGACGAAGACAGCAAATTCCACCAATCGGTGTCGAAATTTGTGGAAGGAGCAGAAGCGGACATTTCGTGGATTGCAGGGGAAGAAAAGAGGATAATGGCACTGGTGAAGAGAACGGTGGATTACTTCCATGGAAATTCTGGAAAGGACGAAGGATTGCGATTGTTCACGATCGTACGCGATTTCCTAATTGTGTTAGACAAGACCTGTCAAGAGGTCGAAGAAGAAGCTGCAGCTGCGGCAAAGCAAGCGAAGAATTCCAAAAAAGAAACTCCAACATCGTCGCAGCAGAATTCAGATCTACAGCAGCGGCTATTTCCAGCGATTGCAGAACGCCGGGTGGGCGAGGACTCAAGTTCTTCGGACGACGACGATGGCAAGAGTTCATCATAA 2655 48.21 MELRRGGYVGGLVILLCALAIVKSEGRRKTLEMVIANAADCHFTSSELEGAMGEKACTKQFVPSIQKEIMDKSIAILPPEMKHGLLDCLKKKSMFSRDSELSPPSLSDWVRRSIEFIFVGSNIHMRQLIRLFQGSSPPHPTAAPAPSPDAESPANSPLLSPIHAPMLSPSNAPTNSPTVVAPAPSPELLPPVGDTDVLDSPPSTVARSPPLPRASPKSRPPKKHEESRTGIIAGIVAAGVGIVLVVALVLFCCRRGKGSKVEPKDGQKNEKPLNNISLSELPAGSSLKAYSDGNPATNEFNANNGTKPPPSFVGNLAVNPENRTYIAEGPTSDGKSSAMPPLKPPPERPDAQPPPPTAPDAAPPPPPPASRAPPPSPPKVSRPPPAPPAAIPGKPQAPPVAPHQGGPNGSSMDPDSLGHKTKLKPFFWDKVLANPGQSMVWHEISDGSFQFNEEMMESLFGYAAVEANKGNRKKDLASEPSVQYIQIIDPRKAQNLSILLRALNVTTEEVMDAIQQGNPDLPAELMQTLLKMAPTAEEELKLRLYSGDLSQLGPAERFLKVLVNVPFAFKRLECLLFMLSLTEDVASIKESFATLQVACKNLRNSRLFFKLLEAVLKTGNRMNVGTYRGGAQAFKLDTLLKLADVKGTDGKTSLLHFVVQEIIRSEGSRAARSNRHSRSSSSIVSSVTVSEDVVDGSVEHHRRLGLQVVSGLSTELQDVKRAAAIDAEGLTKTISKLGQSLLRTKGFINAEMESLDEDSKFHQSVSKFVEGAEADISWIAGEEKRIMALVKRTVDYFHGNSGKDEGLRLFTIVRDFLIVLDKTCQEVEEEAAAAAKQAKNSKKETPTSSQQNSDLQQRLFPAIAERRVGEDSSSSDDDDGKSSS 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2975163 2978312 + CmaCh20G006390.1 Cma20g00639 316453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00639 884 MobiDBLite consensus disorder prediction 257 418 - -
Cma20g00639 884 PANTHER FORMIN-RELATED 3 877 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma20g00639 884 PANTHER FORMIN-LIKE PROTEIN 3 3 877 - -
Cma20g00639 884 Coils Coil 824 844 - -
Cma20g00639 884 ProSiteProfiles Formin homology-2 (FH2) domain profile. 413 846 IPR015425 -
Cma20g00639 884 SUPERFAMILY Formin homology 2 domain (FH2 domain) 363 837 - -
Cma20g00639 884 MobiDBLite consensus disorder prediction 869 884 - -
Cma20g00639 884 MobiDBLite consensus disorder prediction 831 884 - -
Cma20g00639 884 Pfam Formin Homology 2 Domain 419 819 IPR015425 -
Cma20g00639 884 MobiDBLite consensus disorder prediction 270 310 - -
Cma20g00639 884 MobiDBLite consensus disorder prediction 134 226 - -
Cma20g00639 884 Gene3D Formin, FH2 domain 433 859 IPR042201 -
Cma20g00639 884 MobiDBLite consensus disorder prediction 339 402 - -
Cma20g00639 884 SMART it6_source 413 835 IPR015425 -
Cma20g00639 884 MobiDBLite consensus disorder prediction 840 858 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00639 - - - cmos:111449007 1414.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00145 Cma20g00639 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01113 Cma-Chr10:7607891 Cma20g00639 Cma-Chr20:2975163 2.07E-104 dispersed
Cma01g01155 Cma-Chr1:8438441 Cma20g00639 Cma-Chr20:2975163 1.71E-175 wgd
Cma02g00145 Cma-Chr2:691274 Cma20g00639 Cma-Chr20:2975163 0 wgd
Cma20g00639 Cma-Chr20:2975163 Cma09g00921 Cma-Chr9:4588568 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g553 Blo02g00105 Blo15g00519 Bda06g00343 Bda13g00633 . . . . . . Cma02g00145 Cma20g00639 Car02g00124 Car20g00517 . . . . . . . . . . . . . . . . . . Cone10ag1297 . Cone12ag1403 . . . . . . . . Bpe14g00693 Bpe07g00592 Bma02g01338 Bma12g00784 Sed14g0912 Cmo02g00150 . . . . . Cpe16g00458 Cpe05g01457 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . Cme11g00755
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01882 . 446 887 FH2 protein (formin) Gene Family AT3G25500 65.8 4.1e-152 536.6
Cma02g00531 . 405 884 FH2 protein (formin) Gene Family AT3G25500 57.3 4.7e-140 496.5
Cma10g01113 CCT,CST 487 888 FH2 protein (formin) Gene Family AT3G25500 50.7 2.3e-102 371.3
Cma11g01134 CST 381 777 FH2 protein (formin) Gene Family AT3G25500 51.6 2.3e-102 371.3
Cma02g01659 . 620 1068 FH2 protein (formin) Gene Family AT2G43800 59.8 3.6e-141 500.0
Cma19g00185 . 618 1071 FH2 protein (formin) Gene Family AT2G43800 59.2 1.2e-139 495.0
Cma02g00531 . 462 900 FH2 protein (formin) Gene Family AT2G43800 54.8 6.2e-125 446.0
Cma20g00639 CST 219 554 FH2 protein (formin) Gene Family AT4G15200 52.5 3.1e-51 200.3
Cma02g00145 CST 459 622 FH2 protein (formin) Gene Family AT4G15200 63.9 3.8e-49 193.4
Cma01g01155 CST 511 649 FH2 protein (formin) Gene Family AT4G15200 66.4 6.6e-46 182.6
Cma09g00921 CST 502 640 FH2 protein (formin) Gene Family AT4G15200 65.7 3.3e-45 180.3
Cma09g00921 CST 502 944 FH2 protein (formin) Gene Family AT5G54650 67.0 1.3e-167 587.8
Cma01g01155 CST 511 948 FH2 protein (formin) Gene Family AT5G54650 68.1 1.7e-167 587.4
Cma02g00145 CST 464 957 FH2 protein (formin) Gene Family AT5G54650 57.7 3.9e-151 533.1
Cma20g00639 CST 420 829 FH2 protein (formin) Gene Family AT5G54650 65.6 1.8e-148 524.2
Cma02g01659 . 623 1024 FH2 protein (formin) Gene Family AT5G54650 50.6 3.9e-103 373.6
Cma02g00531 . 34 903 FH2 protein (formin) Gene Family AT5G67470 56.5 4.0e-225 778.9
Cma19g00185 . 608 1071 FH2 protein (formin) Gene Family AT5G67470 59.1 5.1e-135 479.6
Cma02g01659 . 603 1066 FH2 protein (formin) Gene Family AT5G67470 57.9 7.6e-131 465.7
Cma04g01882 . 466 886 FH2 protein (formin) Gene Family AT5G67470 61.1 1.7e-127 454.5
Cma11g01134 CST 381 779 FH2 protein (formin) Gene Family AT5G67470 51.5 5.1e-103 373.2
Cma04g00306 . 353 829 FH2 protein (formin) Gene Family AT1G59910 51.5 3.2e-124 443.7
Cma19g00185 . 650 1030 FH2 protein (formin) Gene Family AT5G48360 52.5 6.0e-100 362.8
Cma02g01659 . 644 1025 FH2 protein (formin) Gene Family AT5G48360 52.1 6.0e-100 362.8
Cma02g00531 . 486 861 FH2 protein (formin) Gene Family AT5G48360 50.3 8.7e-91 332.4
Cma11g01134 CST 171 779 FH2 protein (formin) Gene Family AT3G05470 57.3 5.0e-159 559.3
Cma01g01155 CST 509 923 FH2 protein (formin) Gene Family AT3G05470 50.1 6.4e-106 382.9
Cma02g00531 . 466 860 FH2 protein (formin) Gene Family AT3G05470 51.6 1.4e-105 381.7
Cma09g00921 CST 504 914 FH2 protein (formin) Gene Family AT3G05470 50.1 1.7e-103 374.8
Cma02g01653 . 1 1193 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1220.7
Cma19g00192 . 1 1272 FH2 protein (formin) Gene Family AT1G31810 67.8 0.0e+00 1207.6
Cma10g00209 CCT,CST 1366 1687 FH2 protein (formin) Gene Family AT5G07650 75.5 1.9e-130 464.2
Cma11g00123 CCT,CST 1289 1610 FH2 protein (formin) Gene Family AT5G07650 73.0 1.3e-126 451.4
Cma13g01093 CCT 888 1198 FH2 protein (formin) Gene Family AT5G07650 71.1 1.2e-119 428.3
Cma01g00804 . 973 1298 FH2 protein (formin) Gene Family AT5G07650 66.0 5.1e-115 412.9
Cma02g01653 . 859 1190 FH2 protein (formin) Gene Family AT5G07650 61.1 2.2e-110 397.5
Cma09g00412 CCT 986 1308 FH2 protein (formin) Gene Family AT5G07650 63.5 7.2e-109 392.5
Cma19g00192 . 940 1271 FH2 protein (formin) Gene Family AT5G07650 59.9 2.7e-108 390.6
Cma10g00473 . 845 1164 FH2 protein (formin) Gene Family AT5G07650 61.4 3.0e-107 387.1
Cma11g00467 . 912 1231 FH2 protein (formin) Gene Family AT5G07650 61.7 2.6e-106 384.0
Cma01g01662 CCT 1073 1397 FH2 protein (formin) Gene Family AT5G07650 60.4 5.0e-102 369.8
Cma10g00209 CCT,CST 1291 1680 FH2 protein (formin) Gene Family AT5G07770 68.0 5.8e-140 495.4
Cma11g00123 CCT,CST 1216 1600 FH2 protein (formin) Gene Family AT5G07770 68.9 1.3e-139 494.2
Cma13g01093 CCT 797 1198 FH2 protein (formin) Gene Family AT5G07770 61.1 1.7e-126 450.7
Cma01g00804 . 896 1298 FH2 protein (formin) Gene Family AT5G07770 59.7 1.7e-123 440.7
Cma09g00412 CCT 917 1307 FH2 protein (formin) Gene Family AT5G07770 59.5 1.7e-118 424.1
Cma02g01653 . 795 1184 FH2 protein (formin) Gene Family AT5G07770 56.8 1.1e-117 421.4
Cma19g00192 . 876 1265 FH2 protein (formin) Gene Family AT5G07770 56.0 1.3e-115 414.5
Cma10g00473 . 768 1156 FH2 protein (formin) Gene Family AT5G07770 56.5 1.1e-114 411.4
Cma11g00467 . 835 1223 FH2 protein (formin) Gene Family AT5G07770 56.4 9.4e-114 408.3
Cma01g01662 CCT 1010 1389 FH2 protein (formin) Gene Family AT5G07770 57.1 4.4e-111 399.4
Cma09g00412 CCT 891 1315 FH2 protein (formin) Gene Family AT3G32400 74.1 1.6e-170 596.7
Cma01g01662 CCT 985 1399 FH2 protein (formin) Gene Family AT3G32400 70.4 1.8e-158 556.6
Cma11g00467 . 806 1232 FH2 protein (formin) Gene Family AT3G32400 65.0 4.2e-147 518.8
Cma10g00473 . 753 1165 FH2 protein (formin) Gene Family AT3G32400 64.3 1.3e-143 507.3
Cma10g00209 CCT,CST 1291 1687 FH2 protein (formin) Gene Family AT3G32400 66.0 3.1e-142 502.7
Cma02g01653 . 795 1189 FH2 protein (formin) Gene Family AT3G32400 66.2 2.6e-141 499.6
Cma11g00123 CCT,CST 1203 1610 FH2 protein (formin) Gene Family AT3G32400 63.5 1.9e-139 493.4
Cma19g00192 . 876 1270 FH2 protein (formin) Gene Family AT3G32400 65.2 3.2e-139 492.7
Cma13g01093 CCT 782 1201 FH2 protein (formin) Gene Family AT3G32400 57.2 1.9e-128 456.8
Cma01g00804 . 867 1304 FH2 protein (formin) Gene Family AT3G32400 54.9 9.0e-126 448.0
Cma09g00412 CCT 1 1315 FH2 protein (formin) Gene Family AT2G25050 54.7 0.0e+00 1172.1
Cma01g01662 CCT 31 1399 FH2 protein (formin) Gene Family AT2G25050 51.8 0.0e+00 1094.3
Cma11g00467 . 1 1232 FH2 protein (formin) Gene Family AT2G25050 53.0 9.7e-296 1013.8
Cma10g00473 . 1 1165 FH2 protein (formin) Gene Family AT2G25050 53.8 1.3e-295 1013.4
Cma10g00209 CCT,CST 1292 1687 FH2 protein (formin) Gene Family AT5G07780 62.7 3.0e-123 439.5
Cma11g00123 CCT,CST 1217 1610 FH2 protein (formin) Gene Family AT5G07780 61.3 1.4e-120 430.6
Cma13g01093 CCT 812 1201 FH2 protein (formin) Gene Family AT5G07780 57.4 1.3e-110 397.5
Cma01g00804 . 897 1304 FH2 protein (formin) Gene Family AT5G07780 53.7 2.0e-106 383.6
Cma02g01653 . 796 1185 FH2 protein (formin) Gene Family AT5G07780 53.0 2.6e-103 373.2
Cma09g00412 CCT 918 1308 FH2 protein (formin) Gene Family AT5G07780 54.0 1.3e-102 370.9
Cma19g00192 . 877 1266 FH2 protein (formin) Gene Family AT5G07780 52.5 6.5e-102 368.6
Cma10g00473 . 775 1156 FH2 protein (formin) Gene Family AT5G07780 53.0 1.4e-99 360.9
Cma11g00467 . 842 1231 FH2 protein (formin) Gene Family AT5G07780 53.3 5.2e-99 359.0
Cma01g01662 CCT 1011 1390 FH2 protein (formin) Gene Family AT5G07780 52.6 4.8e-97 352.4
Cma11g00123 CCT,CST 1 1619 FH2 protein (formin) Gene Family AT5G07740 62.6 0.0e+00 1103.6
Cma10g00209 CCT,CST 1 1696 FH2 protein (formin) Gene Family AT5G07740 62.1 0.0e+00 1092.8
Cma10g00209 CCT,CST 1365 1694 FH2 protein (formin) Gene Family AT5G07760 74.7 5.2e-129 459.5
Cma11g00123 CCT,CST 1288 1617 FH2 protein (formin) Gene Family AT5G07760 72.0 1.7e-124 444.5
Cma13g01093 CCT 887 1201 FH2 protein (formin) Gene Family AT5G07760 69.3 5.1e-116 416.4
Cma01g00804 . 972 1304 FH2 protein (formin) Gene Family AT5G07760 65.6 1.8e-113 407.9
Cma09g00412 CCT 992 1323 FH2 protein (formin) Gene Family AT5G07760 63.5 7.9e-109 392.5
Cma02g01653 . 869 1190 FH2 protein (formin) Gene Family AT5G07760 62.5 1.3e-108 391.7
Cma10g00473 . 844 1163 FH2 protein (formin) Gene Family AT5G07760 63.0 1.1e-107 388.7
Cma11g00467 . 911 1231 FH2 protein (formin) Gene Family AT5G07760 63.8 3.3e-107 387.1
Cma19g00192 . 950 1271 FH2 protein (formin) Gene Family AT5G07760 61.0 1.1e-105 382.1
Cma01g01662 CCT 1085 1397 FH2 protein (formin) Gene Family AT5G07760 61.8 3.0e-100 364.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00639 Cma_Chr20 FPKM 2.66391 2.635052 3.66463 3.215723 4.747954 4.338879 4.28394 12.997342 12.097226 12.266153