Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00645 ATGCCTAAATTAGAAAAATTACAAACTAGACGGCCTGGATCTTTATCCGTGGCGGAGACTCTTGCAAAATGGAAAGATTACAACGATCACCTTGACTCATGTAATGATGAGGCAAAACTCACTCGTAGAGTTCCAGCCAAGGGATCGAAGAAAGGTTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGGGCACCGAAAAGAGGAAGTCGGCTGTGGTTAGGTACATTTCCAACTGCCATTGATGCGGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGGACTTCAGCTCGCCTGAATTTTCCCAATATCTCAATTCCAACCTTGCTAAAAGAAAAAGAATCACCACCAACAAAGGAATCTCCTTCTCCTGAAATCAAGAGGTCTTCAGTCTCTTCTTTAGGGTCAACTTCACTTAGTCTAAGTTACGAGTCCACAATAACATCAGATCACTCTGAGGAAGGTGCAGCCGAAGATGTGTAG 546 44.69 MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLTRRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPKRGSRLWLGTFPTAIDAALAYDEAARAMYGTSARLNFPNISIPTLLKEKESPPTKESPSPEIKRSSVSSLGSTSLSLSYESTITSDHSEEGAAEDV 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 2991403 2991948 + CmaCh20G006450.1 Cma20g00645 316459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00645 181 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Cma20g00645 181 MobiDBLite consensus disorder prediction 132 158 - -
Cma20g00645 181 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Cma20g00645 181 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Cma20g00645 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 167 - -
Cma20g00645 181 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Cma20g00645 181 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Cma20g00645 181 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Cma20g00645 181 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Cma20g00645 181 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Cma20g00645 181 MobiDBLite consensus disorder prediction 143 158 - -
Cma20g00645 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02891 Cma-Chr4:19169439 Cma20g00645 Cma-Chr20:2991403 1.09E-44 dispersed
Cma15g00145 Cma-Chr15:681336 Cma20g00645 Cma-Chr20:2991403 1.86E-47 dispersed
Cma20g00645 Cma-Chr20:2991403 Cma12g00148 Cma-Chr12:648339 6.90E-24 dispersed
Cma20g00645 Cma-Chr20:2991403 Cma03g00323 Cma-Chr3:4040777 1.12E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37020 PF00847 AP2 6.80E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00645 - - csv:101207656 269.626