Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00649 ATGAGAGGAGTAGCGGCCATGATCTTCAAATTATGCATCTTGTTCTTATTATTACTTCCATCCTCCGCAGATAATTTCAACATATTAAGAGACAGGAATGAAGACTCTCAAGTCTCTGATGGAGGAAGATTTGAACTTGGATTCTTCACTCCAGAGGGAGCCTCAGAAGCCACAAGATACGTTGGTATATGGTTTCATAATTCCAAACCGCGGATCGTTGTGTGGGTTGCTAACAGAGACCAACCACTGTCCGACAAGAATGGAGTTTTTGCTATCAAAGATGGCAATCTCGAGGTATTGGCATCAAACGGCACTTCTTTATGGTCCACCGCCCTCGAGAAATCACACAATTCAACAATGGAGCTGATGGGTTCTGGGAATTTAGTTCTCAAGCAATTAGGCGTCAACAGCACAACTCTGTGGCAAAGCTTCCAAAATCCAACCGATACATTTCTTCCGGGCATGAACATGACCGACGACTTGAAGTTGACTTCTTGGAAAGCTTCAGACGACCCCTCGCCTGGGAATTTTACGTTTCTCAAGGATATAGAAGACCGCTTCGTCATCGAGAAAAGTGGTTCGCGGTATTGGGTCAGCAAGGAACTATGGCAAAATTTCTCAACCGAGACTGATGGAAATATTGCTGAAGCCATGGACTTACTGTCAAAGATTAGTGTCAGTGATTTGAAGGCCACCAACTATACCGTTCGTTTTCAAAATCAAGACTTGGATTACAACTACACAAGAGCAGTTATGGATTTCAGTGGGAAGGTACAGTTCCTTGCTAGAAATAGAGCGAGTGGGAAGTGGGATGTCATCTGGTCGGAACCGGAAAACAAATGTAGTGTGCTATCAGCTTGTGGGACCTTCGCTAGCTGTCGGAGTGACACTAATCATACTTGCAGGTGCTTGCCTGGGTTTGAGCCCAACTCCAAGTATGAGTGGGGTTCTGGTGATTACTCGCATGGGTGCAAGAGAAAATCAGAAATTTGCAGCAAAGAAGTGGGTGAAACTCGAGAGTTTATGAAATTAAATATGAAGGTGAAAAGAACGTCTAATATTGTGAAAGCAAATACTGGGGAATGCAAAAGTAAGTGCCTTGAATCTTGTACATGTGAGGCGTATGCTGAAATAGAAGACAGCAGAGCCAAAATTGTGTGCATCATTTGGGAGGATGACCTCGAAAACATTTGGGAATATGCAGATGGTGGTGACGACGTTCACATTAGTATCAAACGTTCGGACATTGAATTGACAGAGCTCGATTGTGAACCATGTGGCAGCAACATCGTGCCTTATCCTTTGAGTCTGAGACCAGAATTGAACTGCGGTGATCCTTTATATCGTAACTTTAGCTGCAACACTTCCGTTGGTCAGCTCCTCTTTCACACGGCACAAGATGACTACAACGTCACCCACATGAACCCACAACTAAGAACTTTTACCATTGCATTAAACGGGTCTATCTGCAGAGGAAATGATATAGATGCAATTCAAAAGCTTCTGAAACTGGATCGCTCGTCAACATTCGATGTAAGCAGAGGCTGTTACTCTGAATTCAATGAAATTGATATTCAATGGGAGAAACCACATGAACCAATCTGCAATTCGTCAAGAGATTGCACCAAATGGCTGAATTCAACATGCAAATCAACAACAGATGGAACAAATACAAATAGATGCTTGTGCAATTCTCCTTTAGAGTGGACTGGCATGGGATGCCTTGAATCAACAGTTAATGTTCCTGTAGAGAATGGTTTGGATCAGCCACGTGGAAAGCAGAGAAACATCAGAGTTGGCATCATTGTCCCAGTGACTATTGCTGGGTTGATTGTTCTTTCCTGCTTGGTTCTGTATATTTACTACAAAAGAAGGAAGGTACAAGATAAAAAAGAGAAAATAGGAAGCTTTTGGAGAAATCAGGAAGCTTCTCACCTGTACGAAAGTGAGAAGCGTATCAGAGACTTCACGGGTTCCGGGATGTTTGGAGAAGATGATAGAAAAGCCATAGAAGTACCCATTTTGGGTTTGGAAACCATACTCAATGCTACAGACAACTTCTCTGAAGCAAACAAAATTGGACGAGGAGGATTTGGGACAGTTTACAAGGGACTTTTCCCAGGAGGACTGGAAGTTGCAATAAAGAGACTGTCGCAGGGTTCCGCTCAAGGCATGGATGAGTTCAAGAATGAGGCGATTCTCATCGCAAAACTTCAGCATCGAAACCTCGTCCGACTTTTAGGCTATTGTGTTGCAGGAGTAGAAAAACTATTGATCTATGAATATATGCCCAACAAAAGCTTAGACTTCTTTATATTTGATCGAACGCAATGTTTATTGATGAACTGGAAGATGCGTTTTAATATCATCATGGGCATTGCTCGAGGACTAGTTTATTTGCATGAAGATTCAAGGTTGAGGATTATCCACAGAGATATGAAAACAAGCAATATTCTGTTGGATGCAGAAATGAATCCTAAAATCTCAGACTTTGGTTTAGCAAGAATCTTTGATGGCAATCAAATAGAGGGAATCACCAACAGAGTTGTTGGAACCTTCGGGTACATGCCACCAGAATATGCATTGGATGGATCATTCTCAGTGAAATCAGACGTGTTCAGTTTTGGTATAGTTGTGTTGGAGATTGTCAGTGGGAGAAAGAACACAGGGTTCTACCAGTCCAACGAAGCACTGAACCTTCTTGGATATGTATGGAAGTTGTGGAGAGAACACAGAGCAATGGAGATAGTCGAGGCGACGGTGCGTGAAAGGTGCAGTCCAAGTGAAGCTGTTAAATGTGTGGCTGTGGGGTTGCTGTGTGTGCAAGAAGACCCCAAGGACCGCCCCACCATGTCAAATGCAGTGTTTATGCTGAGCTCTGGCAGTGATCCTGCTTCTCTTCCCAATCCTAAGCAGCCGGCTTTCCTTGATAAGAGGTCCACTCCTTCTACTTCTATTGCAACCTCTTCTTCCGAGTTTAAGCAAGAAATTGTAAGTAATGATTATAGCTTACTTGAGCCTCGCTAA 3027 43.05 MRGVAAMIFKLCILFLLLLPSSADNFNILRDRNEDSQVSDGGRFELGFFTPEGASEATRYVGIWFHNSKPRIVVWVANRDQPLSDKNGVFAIKDGNLEVLASNGTSLWSTALEKSHNSTMELMGSGNLVLKQLGVNSTTLWQSFQNPTDTFLPGMNMTDDLKLTSWKASDDPSPGNFTFLKDIEDRFVIEKSGSRYWVSKELWQNFSTETDGNIAEAMDLLSKISVSDLKATNYTVRFQNQDLDYNYTRAVMDFSGKVQFLARNRASGKWDVIWSEPENKCSVLSACGTFASCRSDTNHTCRCLPGFEPNSKYEWGSGDYSHGCKRKSEICSKEVGETREFMKLNMKVKRTSNIVKANTGECKSKCLESCTCEAYAEIEDSRAKIVCIIWEDDLENIWEYADGGDDVHISIKRSDIELTELDCEPCGSNIVPYPLSLRPELNCGDPLYRNFSCNTSVGQLLFHTAQDDYNVTHMNPQLRTFTIALNGSICRGNDIDAIQKLLKLDRSSTFDVSRGCYSEFNEIDIQWEKPHEPICNSSRDCTKWLNSTCKSTTDGTNTNRCLCNSPLEWTGMGCLESTVNVPVENGLDQPRGKQRNIRVGIIVPVTIAGLIVLSCLVLYIYYKRRKVQDKKEKIGSFWRNQEASHLYESEKRIRDFTGSGMFGEDDRKAIEVPILGLETILNATDNFSEANKIGRGGFGTVYKGLFPGGLEVAIKRLSQGSAQGMDEFKNEAILIAKLQHRNLVRLLGYCVAGVEKLLIYEYMPNKSLDFFIFDRTQCLLMNWKMRFNIIMGIARGLVYLHEDSRLRIIHRDMKTSNILLDAEMNPKISDFGLARIFDGNQIEGITNRVVGTFGYMPPEYALDGSFSVKSDVFSFGIVVLEIVSGRKNTGFYQSNEALNLLGYVWKLWREHRAMEIVEATVRERCSPSEAVKCVAVGLLCVQEDPKDRPTMSNAVFMLSSGSDPASLPNPKQPAFLDKRSTPSTSIATSSSEFKQEIVSNDYSLLEPR 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3000088 3005156 - CmaCh20G006490.1 Cma20g00649 316463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00649 1008 Pfam S-locus glycoprotein domain 228 310 IPR000858 GO:0048544
Cma20g00649 1008 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524
Cma20g00649 1008 ProSiteProfiles Protein kinase domain profile. 687 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00649 1008 Pfam D-mannose binding lectin 73 162 IPR001480 -
Cma20g00649 1008 CDD STKc_IRAK 693 958 - -
Cma20g00649 1008 SMART blect_4 28 147 IPR001480 -
Cma20g00649 1008 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 997 - -
Cma20g00649 1008 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 27 997 - -
Cma20g00649 1008 ProSiteProfiles PAN/Apple domain profile. 331 414 IPR003609 -
Cma20g00649 1008 MobiDBLite consensus disorder prediction 961 992 - -
Cma20g00649 1008 SMART serkin_6 687 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00649 1008 Gene3D Transferase(Phosphotransferase) domain 1 763 967 - -
Cma20g00649 1008 CDD B_lectin 38 147 IPR001480 -
Cma20g00649 1008 Gene3D - 30 145 IPR036426 -
Cma20g00649 1008 MobiDBLite consensus disorder prediction 976 992 - -
Cma20g00649 1008 Gene3D Phosphorylase Kinase; domain 1 661 762 - -
Cma20g00649 1008 Pfam PAN-like domain 341 396 IPR003609 -
Cma20g00649 1008 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Cma20g00649 1008 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 172 IPR036426 -
Cma20g00649 1008 SUPERFAMILY Protein kinase-like (PK-like) 675 975 IPR011009 -
Cma20g00649 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Cma20g00649 1008 Pfam Protein tyrosine and serine/threonine kinase 690 955 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00649 Cma-Chr20:3000088 Cma01g01171 Cma-Chr1:8511407 7.32E-17 dispersed
Cma20g00649 Cma-Chr20:3000088 Cma20g00651 Cma-Chr20:3006761 3.61E-22 proximal
Cma20g00649 Cma-Chr20:3000088 Cma20g00650 Cma-Chr20:3005517 8.69E-22 tandem
Cma01g01169 Cma-Chr1:8503318 Cma20g00649 Cma-Chr20:3000088 4.26E-134 wgd
Cma13g00696 Cma-Chr13:6334286 Cma20g00649 Cma-Chr20:3000088 6.55E-44 wgd
Cma19g00948 Cma-Chr19:8421147 Cma20g00649 Cma-Chr20:3000088 0 wgd
Cma20g00649 Cma-Chr20:3000088 Cma03g00504 Cma-Chr3:4936160 9.78E-42 wgd
Cma20g00649 Cma-Chr20:3000088 Cma07g00288 Cma-Chr7:1281330 1.63E-45 wgd
Cma20g00649 Cma-Chr20:3000088 Cma09g00906 Cma-Chr9:4507821 2.79E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69393 PF07714 PK_Tyr_Ser-Thr 3.60E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00649 - - cpep:111777045 1884.0