Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00669 ATGCCAGATGAAAATTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTCGATCCCACTGGAAGGTTTGGACGATACAATGTTCTTCTTGGGTCTGGAGCAGTGAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGAATTGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGGGATCCAATGTTCATTAACCGCTTGAGGTCTGAGGTTCAGCTGCTGAGCACGTTAAACAACAAATATATAATTGTTTGTTACAGTGTTTGGAATGATGATGAGCATAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGAATATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAACAGGTACTCGAGGGATTGGATTATCTTCATACTCACGAACCTTGCATTATTCACAGGGATCTCAACTGCAGTAACATATTTGTCAATGGTAACATTGGGCAGGTTAAAATAGGCGATCTAGGTCTTGCAGCTATCGTTGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAAGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCGATGTGTTTGCTCGAGATGGTTACATTGGAGATACCATACAGTGAATGTGATAGTGTTGCAAAAATATTCAGGAAGGTGACAACTGGAATAAAACCCCAAGCATTAGACAAAGTGACTAATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGAGCAAGGCCTTCCGCTTCCGAACTTCTCAAGGATCCCTTCTTTGACGAAGTTGGGGATGAAGATTCTGAGCAGTCTTAA 888 42.0 MPDENSIPFDRDAEPFVEVDPTGRFGRYNVLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPMFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHNTLNFITEVCTSGNLREYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTLEIPYSECDSVAKIFRKVTTGIKPQALDKVTNDEVRAFIEKCIAQPRARPSASELLKDPFFDEVGDEDSEQS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3066602 3069401 - CmaCh20G006690.1 Cma20g00669 316483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00669 295 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00669 295 SUPERFAMILY Protein kinase-like (PK-like) 19 285 IPR011009 -
Cma20g00669 295 CDD STKc_WNK 24 284 - -
Cma20g00669 295 Pfam Protein kinase domain 31 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00669 295 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 1 287 - -
Cma20g00669 295 MobiDBLite consensus disorder prediction 271 295 - -
Cma20g00669 295 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Cma20g00669 295 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Cma20g00669 295 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 287 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00871 Cma20g00669 CCT
Cma19g00871 Cma20g00669 ECH
Cma02g00216 Cma20g00669 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00669 Cma-Chr20:3066602 Cma13g00858 Cma-Chr13:7061331 1.49E-125 dispersed
Cma06g00855 Cma-Chr6:4765519 Cma20g00669 Cma-Chr20:3066602 2.84E-165 transposed
Cma16g00942 Cma-Chr16:7260086 Cma20g00669 Cma-Chr20:3066602 2.65E-164 transposed
Cma02g00216 Cma-Chr2:961119 Cma20g00669 Cma-Chr20:3066602 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69395 PF00069 Pkinase 1.50E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00669 K08867 - csv:101222153 574.704