Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00669 | ATGCCAGATGAAAATTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTCGATCCCACTGGAAGGTTTGGACGATACAATGTTCTTCTTGGGTCTGGAGCAGTGAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGAATTGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGGGATCCAATGTTCATTAACCGCTTGAGGTCTGAGGTTCAGCTGCTGAGCACGTTAAACAACAAATATATAATTGTTTGTTACAGTGTTTGGAATGATGATGAGCATAATACGTTGAATTTCATTACCGAGGTGTGCACATCAGGAAATCTGAGGGAATATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAACAGGTACTCGAGGGATTGGATTATCTTCATACTCACGAACCTTGCATTATTCACAGGGATCTCAACTGCAGTAACATATTTGTCAATGGTAACATTGGGCAGGTTAAAATAGGCGATCTAGGTCTTGCAGCTATCGTTGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAAGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCGATGTGTTTGCTCGAGATGGTTACATTGGAGATACCATACAGTGAATGTGATAGTGTTGCAAAAATATTCAGGAAGGTGACAACTGGAATAAAACCCCAAGCATTAGACAAAGTGACTAATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGAGCAAGGCCTTCCGCTTCCGAACTTCTCAAGGATCCCTTCTTTGACGAAGTTGGGGATGAAGATTCTGAGCAGTCTTAA | 888 | 42.0 | MPDENSIPFDRDAEPFVEVDPTGRFGRYNVLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPMFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHNTLNFITEVCTSGNLREYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTLEIPYSECDSVAKIFRKVTTGIKPQALDKVTNDEVRAFIEKCIAQPRARPSASELLKDPFFDEVGDEDSEQS | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3066602 | 3069401 | - | CmaCh20G006690.1 | Cma20g00669 | 316483 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00669 | 295 | ProSiteProfiles | Protein kinase domain profile. | 26 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00669 | 295 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 285 | IPR011009 | - | |
Cma20g00669 | 295 | CDD | STKc_WNK | 24 | 284 | - | - | |
Cma20g00669 | 295 | Pfam | Protein kinase domain | 31 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma20g00669 | 295 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED | 1 | 287 | - | - | |
Cma20g00669 | 295 | MobiDBLite | consensus disorder prediction | 271 | 295 | - | - | |
Cma20g00669 | 295 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 289 | - | - | |
Cma20g00669 | 295 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 107 | - | - | |
Cma20g00669 | 295 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 1 | 287 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma19g00871 | Cma20g00669 | CCT | |
Cma19g00871 | Cma20g00669 | ECH | |
Cma02g00216 | Cma20g00669 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma20g00669 | Cma-Chr20:3066602 | Cma13g00858 | Cma-Chr13:7061331 | 1.49E-125 | dispersed | |
Cma06g00855 | Cma-Chr6:4765519 | Cma20g00669 | Cma-Chr20:3066602 | 2.84E-165 | transposed | |
Cma16g00942 | Cma-Chr16:7260086 | Cma20g00669 | Cma-Chr20:3066602 | 2.65E-164 | transposed | |
Cma02g00216 | Cma-Chr2:961119 | Cma20g00669 | Cma-Chr20:3066602 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69395 | PF00069 | Pkinase | 1.50E-50 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00669 | K08867 | - | csv:101222153 | 574.704 |