Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00670 ATGCAAGCTTCTCAGCTTCATAGAGATTCACATATGTCGAAGAGGCTATGTTATCAGCCAATTCAAGGAGCGGATACCTACTGTTTCTCCCAATTATGTTCTAGTGCTGGCAACCAAAGAGCTCAGCTCAATGTCGATGACATCGGTGATCGGTTCTGCACTCTGGAGTCGTCCTCTGGTAGCCAAGGCTATGCAGCTCACAACTCGACGTCGACTGTCACTTTCTCATCCAATGGGAGTACAATATCGCAACAGGATTCTCGTTCGAATCCCTCTGATCAGCATAATTCCATTGACTATGCATATGGCTCTCCTGTAAGCGGATCCAGCATAACAGATGATCTTAGTGATTTTAGGCACAAATTAAGGGAACTGGAAAGTGTAATGCTTGGCCCTGATTCTGATGTTATTGATAGTTTTGATAGTATCTTCCAGGAGGGAACTGAGAATCCAGAGATGGGAACTTGGGGGCAAGTGATGGATGTTATCACCAAAGGAAGCTTAAAAAAGATCCTAATAGCTTGTGCTAAAGCTGTGTCAGATAACGATGTGTTGATGGCGCAATGGCTGATGGATGAATTGCGTAAGATGGTTTCGGTTTGCGGAGAACCGATGCAGCGATTGGGAGCGTATATGCTTGAGGGGCTAGTTGCACGGTTAGCCTCCTCGGGTAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCACGAGCCGAGCTCCTCTCGTATATGCACATTCTTTACGAGGTTTGCCCGTACTTCAAATTCGGATACATGTCAGCTAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAATGGATCACTTTGATTCAAGCTTTTGCAAGCAGGCCTGGTCGACCGCCTCACATTCGTATAACCGGTATAGATGATCCTGCATCGGCTTATGCTCGTGGAGGCGGGCTAGACATCGTTGGTAGGAGGCTTTCCAAGTTAGCAAAATTGTATAATGTGCCATTTGAGTTTCACTCGGCTGCCATTTCTGGCTGCGATGTTCAGCAAAAAAACTTAAGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTCGCGTTCATGCTACACCATATGCCAGACGAGAGCGTAAGCACCGAAAATCACCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCCCCAAAGGTAGTGACAGTCGTCGAACAAGAATCCAACACGAACACTGCTGCATTCTATCCCCGGTTCATCGAGACGCTGGATTACTACAACGCCATGTTCGAATCGATCGACGTTACTCTTCCAAGACAACACAAGGAGCGAATCAACATCGAGCAGCATTGTCTAGCTAGGGAAGTTGTGAACATACTAGCATGCGAAGGGGCCGAGAGAGTGGAACGACACGAGCTACTCGGAAAGTGGAGACTCCGATTCGCAATGGCAGGATTTACAGCTTACCCATTAAGCTCTTTGGTTAACGCTACCATAAAAACGTTATTAGATAACTATTCTAACAGGTATAGGATTGAAGAGAGAGAAGGGGCTCTGTATCTAGGCTGGATGGATAGGGATTTGGTCGCTTCCTGTGCATGGAAGTGA 1617 46.26 MQASQLHRDSHMSKRLCYQPIQGADTYCFSQLCSSAGNQRAQLNVDDIGDRFCTLESSSGSQGYAAHNSTSTVTFSSNGSTISQQDSRSNPSDQHNSIDYAYGSPVSGSSITDDLSDFRHKLRELESVMLGPDSDVIDSFDSIFQEGTENPEMGTWGQVMDVITKGSLKKILIACAKAVSDNDVLMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFASRPGRPPHIRITGIDDPASAYARGGGLDIVGRRLSKLAKLYNVPFEFHSAAISGCDVQQKNLSIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTVVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTAYPLSSLVNATIKTLLDNYSNRYRIEEREGALYLGWMDRDLVASCAWK 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3070596 3072212 - CmaCh20G006700.1 Cma20g00670 316484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00670 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
Cma20g00670 538 Pfam GRAS domain family 168 538 IPR005202 -
Cma20g00670 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 538 IPR005202 -
Cma20g00670 538 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 29 538 - -
Cma20g00670 538 MobiDBLite consensus disorder prediction 60 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00217 Cma20g00670 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01159 Cma-Chr1:8466405 Cma20g00670 Cma-Chr20:3070596 9.42E-174 dispersed
Cma03g00582 Cma-Chr3:5255162 Cma20g00670 Cma-Chr20:3070596 0 dispersed
Cma06g00294 Cma-Chr6:1409245 Cma20g00670 Cma-Chr20:3070596 6.15E-72 dispersed
Cma06g00659 Cma-Chr6:3268699 Cma20g00670 Cma-Chr20:3070596 0 dispersed
Cma07g00354 Cma-Chr7:1515619 Cma20g00670 Cma-Chr20:3070596 0 dispersed
Cma09g00916 Cma-Chr9:4566670 Cma20g00670 Cma-Chr20:3070596 4.44E-173 dispersed
Cma13g00118 Cma-Chr13:798320 Cma20g00670 Cma-Chr20:3070596 4.34E-70 dispersed
Cma14g00142 Cma-Chr14:584353 Cma20g00670 Cma-Chr20:3070596 3.46E-69 dispersed
Cma16g00944 Cma-Chr16:7274694 Cma20g00670 Cma-Chr20:3070596 0 dispersed
Cma01g01007 Cma-Chr1:7294187 Cma20g00670 Cma-Chr20:3070596 3.94E-156 transposed
Cma09g01087 Cma-Chr9:5848091 Cma20g00670 Cma-Chr20:3070596 1.34E-149 transposed
Cma02g00217 Cma-Chr2:966346 Cma20g00670 Cma-Chr20:3070596 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37023 PF03514 GRAS 1.10E-135 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00670 - - csv:101221914 974.156