Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00673 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTGCTCAAGCTCTCAAGGTGCTTACTGAGGATGTCTTTGAGCTGCAAGTTTTCTACCTCCAATGGAAAATTTCTAGCTGGGTTTAAGCTGAAGAAGGCGAAGGAGTATCTGTGTTTGTTAAATTCCACCGGAAAATGGAAGAAGAGGCTTCTCTGTCTTTTGATTCTTGCTCTACTTATACTTTTGAGCTGTTGGTTTTCCTTGCGTTCGTATAATGTAAATAGTGGCACAAAACAGAAGACCTCGTACTTGTTCGATGAAGAAACTCGAACTTTTCTGCGGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTATCCGAATCAGATCGGATATCTGGGTGCACCAATGATTTTGGACCTGACACATCAGAGTTGGATGGAATTGGCTGTGCTCAGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGAAGAAAGTGCAGATTCCAATGTTGGGCGGTGCCCAGTTCGAACTGAGAAGATCCCTGAAAATTCTGACCAATTATTCTTTGAGGACATAACTGTTCCATTTGCTACAGACTTATCCACCTCTTTACTTTCAAATGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGACAGCTTAGATGCCTTATAAGAAAGCACTGGAAGATTTTCTGTAGTTTATTGATTGGATGTTTTTGGGTTCTTCTTGGACTGGTAGTGTTCCAGAAAGTATCTGGTTTCCATCTAAAATTGTGGAACAAGAAACATCCAAAGCCAAATCAGCCATTGGTTCATCAACAGTGGGTCTTACTAAGGAGAAAACAGCATCAACAAGTCAAAGATTCTCCTAAAGGCGCTGGTAAATGGCGGAAGGTGCTCTTAAGAATATTTATTGTTGTTGGGATCATCGGGTCCGTTTGGTTATTTTGGTACCTGAACCAGACAGCCATTTTGAGACGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTCAACGTTAGCATGAACCATGTTCATGCATTGGCTGTTCTTACCTCTACTTTCCACCATGGAAAACAGCCTTCTGCCATTGATCAGAAAACATTTGGTGAATATACAGAAAGAACCTCCTTTGAAAGACCGCTGACTAGCGGTGTAGCTTATGCTCTGAAAGTTAATCACTCAGAAAGAGAGAAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACTGAGGACCAAACTCTTGTTCAAGATTGTAACCCAGAAAATTTGGACCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTTGCACATATAGTTTCTATCGACATGATGTCGGGAAAAGAGGACCGTGAGAACATCTTGCGAGCTAGGGCGTCTGGAAAGGGAGTGCTTACATCTCCTTTTAAACTTTTGAAATCTAATCACCTTGGAGTTGTTCTCACATTTGCTGTCTATAACACTGACCTCCCCCCAGATGCTACTCCCAAGCAACGTATTGAAGCTACTGTTGGCTATCTAGGTGCATCATATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACAACCAATGATTCTGCTCCGATCAACATGTATGGTTCTGATTTTACCGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCATTAAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACGGCTATCAATTCATCAGTTGGCGTCCTAATCATTACCTTGTTGGTTGGCCATATATTTCATGCAGCAATAAGTCGGATTGCAAAAGTGGAGAATGACTATCACGAGACGATGGGGCTTAAAAGTCGCGCTGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTCAAATTACTGATGGACACTAACCTTGATTCAAAGCAACTGGATTTTGCCCAGACTGCCCACGAGAGTGGAAAAGATCTGATATCACTCATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGAAAGGCTTGAACTTGAATCTGTGCCCTTCGATCTGCGTGCTATACTTGATAATGTGATCTCACCTTTTTCTCTCAAATCTAATGTCAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATTGGTGACCCTGGACGCTTTCGTCAAATAATTACTCATCTTGTTGGAAATTCACTCAAGTTTACTCATAAAAATGGACATATATTAGTCTCGGTGCATCTGGCTGACGAGGTGAGAGGTCCAGTTGATTTTATGGACATTGTTCTTAAACAAGGCACATATGTAGTTGGAGATACATCAAACAATAGTTGTACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAGAAATTCAAAAAGTTCAGCAGGACGGATGCGGTGGAGGAACCCAAAACAATTAGAATACTCGTGACCGTAGAGGATACAGGTGTAGGAATTCCCCACGATGCACAAAACCGAGTATTCATGCCTTTTATGCAGGCAGATAGTTCCACATCTCGGACGTATGGTGGCACGGGAATAGGATTGAGTATTAGCAAACATTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATTGGTAGCACATTTTCTTTTACGGTTTCTTTCCAGAAAGGGGAAATTAGTTCTTTGGATACCAGACAGCCACACTGTGATCTGGGTGTTGTCGATTTCCAGGGGCTAAGAGCATTAATAATTGATAATAGCTGCGTTCGAGCAGAGGTCACGAGATATCATCTTCAGAGGCTGGGGATTTCTGTTGATATTACTCTGAGTGCAGAGTCTGCTTATCAATATCTATCCAATACCTCCAACACAAGAGCATCGACACAACTGGCCATGATTCTTATAGACAAAGACATTTGGGACAAGAAAGAGGGTCTCAAGTTCCATCTTTTGTTTAAAGAGCATGTGAATGGTCCAAAACTCTTTCTCTTGGCATCCCCCAAAAGCTCCAATGAGCAATATGAACTTAAATCTTCTGGTCATGTAAATAATGTGTTAAGTAAGCCTCTTCAGTTAAATGTGTTGGTCAGTTGCTTCCACGAAGTCTTCGGGATCGGGAAGAGGAATCAAGTAATTATTAAACGACCATCGACTCTTGGAAATCTGCTGAAAGAAAAGCATATTCTGGTTGTGGATGACAATGCTGTAAACAGAAAGGTGGCCGAAGGCGCCCTAAAGAAATATGGAGCTGTTGTAACTTGTGTAGAACGTGGAACGGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACGGGTCCGTGCTGTAGAAAGTGGGGTGAACGCGAAAATTTCATCTGGAGAAGTGTCAAATGAGGATAATAAGGTCCATTGGCACACACCAATATTTGCTATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCGTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTCGAAGAGGAGCAGCTTTATTCGACTGTAGCACGTTTTCTTGAGACTGCTTGA 3753 42.42 MWRGCSGGAGVLLKLSRCLLRMSLSCKFSTSNGKFLAGFKLKKAKEYLCLLNSTGKWKKRLLCLLILALLILLSCWFSLRSYNVNSGTKQKTSYLFDEETRTFLRHFNVSKNQLQALASLLSESDRISGCTNDFGPDTSELDGIGCAQRLLYWEQDLHKQYVWVEESADSNVGRCPVRTEKIPENSDQLFFEDITVPFATDLSTSLLSNGNQLCGKIIEQAGQLRCLIRKHWKIFCSLLIGCFWVLLGLVVFQKVSGFHLKLWNKKHPKPNQPLVHQQWVLLRRKQHQQVKDSPKGAGKWRKVLLRIFIVVGIIGSVWLFWYLNQTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTSFERPLTSGVAYALKVNHSEREKFEMMHGWTIKKMETEDQTLVQDCNPENLDPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPKQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHETMGLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESERLELESVPFDLRAILDNVISPFSLKSNVKGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSLKFTHKNGHILVSVHLADEVRGPVDFMDIVLKQGTYVVGDTSNNSCTTFSGLPVVDRWKSWEKFKKFSRTDAVEEPKTIRILVTVEDTGVGIPHDAQNRVFMPFMQADSSTSRTYGGTGIGLSISKHLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISSLDTRQPHCDLGVVDFQGLRALIIDNSCVRAEVTRYHLQRLGISVDITLSAESAYQYLSNTSNTRASTQLAMILIDKDIWDKKEGLKFHLLFKEHVNGPKLFLLASPKSSNEQYELKSSGHVNNVLSKPLQLNVLVSCFHEVFGIGKRNQVIIKRPSTLGNLLKEKHILVVDDNAVNRKVAEGALKKYGAVVTCVERGTDAVALLNPPHNFDACFMDLQMPEMDGYEATRRVRAVESGVNAKISSGEVSNEDNKVHWHTPIFAMTADLIQAMNEECVKCGMDGYVAKPFEEEQLYSTVARFLETA 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3087195 3094690 - CmaCh20G006730.1 Cma20g00673 316487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00673 1250 Gene3D CHASE domain 376 603 IPR042240 -
Cma20g00673 1250 SUPERFAMILY CheY-like 1109 1248 IPR011006 -
Cma20g00673 1250 Pfam CHASE domain 375 569 IPR006189 -
Cma20g00673 1250 Gene3D - 323 375 - -
Cma20g00673 1250 Gene3D - 85 125 - -
Cma20g00673 1250 CDD HisKA 657 718 IPR003661 GO:0000155|GO:0007165
Cma20g00673 1250 SMART CHASE_2 372 571 IPR006189 -
Cma20g00673 1250 SMART HisKA_10 657 722 IPR003661 GO:0000155|GO:0007165
Cma20g00673 1250 PANTHER HISTIDINE KINASE 2 285 1248 - -
Cma20g00673 1250 ProSiteProfiles CHASE domain profile. 372 596 IPR006189 -
Cma20g00673 1250 ProSiteProfiles Response regulatory domain profile. 1112 1247 IPR001789 GO:0000160
Cma20g00673 1250 CDD REC_hyHK_CKI1_RcsC-like 1113 1243 - -
Cma20g00673 1250 Pfam Response regulator receiver domain 1113 1243 IPR001789 GO:0000160
Cma20g00673 1250 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 769 939 IPR003594 -
Cma20g00673 1250 ProSiteProfiles Histidine kinase domain profile. 664 941 IPR005467 -
Cma20g00673 1250 SUPERFAMILY CheY-like 960 1088 IPR011006 -
Cma20g00673 1250 PRINTS Bacterial sensor protein C-terminal signature 866 880 IPR004358 GO:0016310|GO:0016772
Cma20g00673 1250 PRINTS Bacterial sensor protein C-terminal signature 884 894 IPR004358 GO:0016310|GO:0016772
Cma20g00673 1250 PRINTS Bacterial sensor protein C-terminal signature 901 919 IPR004358 GO:0016310|GO:0016772
Cma20g00673 1250 PRINTS Bacterial sensor protein C-terminal signature 925 938 IPR004358 GO:0016310|GO:0016772
Cma20g00673 1250 Pfam His Kinase A (phospho-acceptor) domain 657 721 IPR003661 GO:0000155|GO:0007165
Cma20g00673 1250 ProSiteProfiles Response regulatory domain profile. 965 1088 IPR001789 GO:0000160
Cma20g00673 1250 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 711 937 IPR036890 -
Cma20g00673 1250 SMART REC_2 1111 1243 IPR001789 GO:0000160
Cma20g00673 1250 CDD HATPase_EvgS-ArcB-TorS-like 774 937 - -
Cma20g00673 1250 Coils Coil 707 727 - -
Cma20g00673 1250 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 645 723 IPR036097 GO:0000155|GO:0007165
Cma20g00673 1250 Gene3D - 960 1096 - -
Cma20g00673 1250 Gene3D - 1106 1250 - -
Cma20g00673 1250 Gene3D - 626 720 - -
Cma20g00673 1250 SMART HKATPase_4 769 941 IPR003594 -
Cma20g00673 1250 Gene3D - 723 943 IPR036890 -
Cma20g00673 1250 PANTHER TWO-COMPONENT HISTIDINE KINASE 285 1248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00120 Cma-Chr6:631204 Cma20g00673 Cma-Chr20:3087195 2.63E-15 dispersed
Cma08g00179 Cma-Chr8:1008979 Cma20g00673 Cma-Chr20:3087195 0 dispersed
Cma17g01443 Cma-Chr17:9486488 Cma20g00673 Cma-Chr20:3087195 0 dispersed
Cma11g01285 Cma-Chr11:8585756 Cma20g00673 Cma-Chr20:3087195 0 wgd
Cma02g00221 Cma-Chr2:978809 Cma20g00673 Cma-Chr20:3087195 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37024 PF03924 CHASE 9.30E-35 CL0165 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00673 K14489 - csv:101221294 2159.8