Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00686 ATGGCGGAATCGGATAACGAATCGGGAGGGCACAACAGCAACGCGAACAGCGAGCTGTCTGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGTAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACGGTACAAGAGTGCGTATCGGAGTTTATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAATTGGAAGGGGAAAAGAGCACTATGGTGAGACAGGGGGAGAAAGACGGTAGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGCTAGTGGTGGTGGTGGCGGAGTCAACTCTAGTACTGGTGGTGGTGGTGTTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTAGTAGTGGTGGATATCACCACATGGGAATCGGCGGAGGGAAGGAAGGAAATAGTGGTTCCCGGTAG 612 52.61 MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTMVRQGEKDGSGGGGPGGSGASGGGGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYGSSGGYHHMGIGGGKEGNSGSR 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3142972 3143583 + CmaCh20G006860.1 Cma20g00686 316500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00686 203 MobiDBLite consensus disorder prediction 116 154 - -
Cma20g00686 203 MobiDBLite consensus disorder prediction 1 21 - -
Cma20g00686 203 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cma20g00686 203 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cma20g00686 203 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cma20g00686 203 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma20g00686 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 182 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma20g00686 203 MobiDBLite consensus disorder prediction 1 23 - -
Cma20g00686 203 Gene3D Histone, subunit A 14 132 IPR009072 GO:0046982
Cma20g00686 203 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 182 - -
Cma20g00686 203 Coils Coil 103 123 - -
Cma20g00686 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cma20g00686 203 SUPERFAMILY Histone-fold 24 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00791 Cma-Chr4:4031415 Cma20g00686 Cma-Chr20:3142972 4.05E-62 dispersed
Cma06g00674 Cma-Chr6:3371316 Cma20g00686 Cma-Chr20:3142972 1.55E-46 dispersed
Cma16g00666 Cma-Chr16:3471267 Cma20g00686 Cma-Chr20:3142972 2.99E-64 dispersed
Cma20g00686 Cma-Chr20:3142972 Cma14g00188 Cma-Chr14:792274 2.91E-53 dispersed
Cma02g01319 Cma-Chr2:7741554 Cma20g00686 Cma-Chr20:3142972 5.13E-09 transposed
Cma10g01088 Cma-Chr10:7192352 Cma20g00686 Cma-Chr20:3142972 5.20E-34 transposed
Cma17g01111 Cma-Chr17:7785153 Cma20g00686 Cma-Chr20:3142972 2.58E-51 transposed
Cma16g00965 Cma-Chr16:7456100 Cma20g00686 Cma-Chr20:3142972 2.03E-61 transposed
Cma02g00234 Cma-Chr2:1048906 Cma20g00686 Cma-Chr20:3142972 2.16E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37026 PF00808 CBFD_NFYB_HMF 1.90E-27 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00686 K08065 - csv:101219076 249.595