Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00686 | ATGGCGGAATCGGATAACGAATCGGGAGGGCACAACAGCAACGCGAACAGCGAGCTGTCTGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGTAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACGGTACAAGAGTGCGTATCGGAGTTTATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAATTGGAAGGGGAAAAGAGCACTATGGTGAGACAGGGGGAGAAAGACGGTAGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGCTAGTGGTGGTGGTGGCGGAGTCAACTCTAGTACTGGTGGTGGTGGTGTTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTAGTAGTGGTGGATATCACCACATGGGAATCGGCGGAGGGAAGGAAGGAAATAGTGGTTCCCGGTAG | 612 | 52.61 | MAESDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYRELEGEKSTMVRQGEKDGSGGGGPGGSGASGGGGGVNSSTGGGGVGGGGFNGVGGMYGGMMMMGHHQGGVYGSSGGYHHMGIGGGKEGNSGSR | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3142972 | 3143583 | + | CmaCh20G006860.1 | Cma20g00686 | 316500 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00686 | 203 | MobiDBLite | consensus disorder prediction | 116 | 154 | - | - | |
Cma20g00686 | 203 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma20g00686 | 203 | PRINTS | CCAAT-binding transcription factor subunit A signature | 55 | 73 | - | - | |
Cma20g00686 | 203 | PRINTS | CCAAT-binding transcription factor subunit A signature | 74 | 92 | - | - | |
Cma20g00686 | 203 | PRINTS | CCAAT-binding transcription factor subunit A signature | 93 | 111 | - | - | |
Cma20g00686 | 203 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 58 | 74 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cma20g00686 | 203 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 182 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cma20g00686 | 203 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma20g00686 | 203 | Gene3D | Histone, subunit A | 14 | 132 | IPR009072 | GO:0046982 | |
Cma20g00686 | 203 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 | 1 | 182 | - | - | |
Cma20g00686 | 203 | Coils | Coil | 103 | 123 | - | - | |
Cma20g00686 | 203 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 27 | 91 | IPR003958 | - | |
Cma20g00686 | 203 | SUPERFAMILY | Histone-fold | 24 | 128 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00791 | Cma-Chr4:4031415 | Cma20g00686 | Cma-Chr20:3142972 | 4.05E-62 | dispersed | |
Cma06g00674 | Cma-Chr6:3371316 | Cma20g00686 | Cma-Chr20:3142972 | 1.55E-46 | dispersed | |
Cma16g00666 | Cma-Chr16:3471267 | Cma20g00686 | Cma-Chr20:3142972 | 2.99E-64 | dispersed | |
Cma20g00686 | Cma-Chr20:3142972 | Cma14g00188 | Cma-Chr14:792274 | 2.91E-53 | dispersed | |
Cma02g01319 | Cma-Chr2:7741554 | Cma20g00686 | Cma-Chr20:3142972 | 5.13E-09 | transposed | |
Cma10g01088 | Cma-Chr10:7192352 | Cma20g00686 | Cma-Chr20:3142972 | 5.20E-34 | transposed | |
Cma17g01111 | Cma-Chr17:7785153 | Cma20g00686 | Cma-Chr20:3142972 | 2.58E-51 | transposed | |
Cma16g00965 | Cma-Chr16:7456100 | Cma20g00686 | Cma-Chr20:3142972 | 2.03E-61 | transposed | |
Cma02g00234 | Cma-Chr2:1048906 | Cma20g00686 | Cma-Chr20:3142972 | 2.16E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37026 | PF00808 | CBFD_NFYB_HMF | 1.90E-27 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00686 | K08065 | - | csv:101219076 | 249.595 |