Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00692 ATGGAGGACAAGGGAGGTATCAGCAGCAACAAGCCAGCCGAAAAATGGATGGCATTTGACAGAGAATCAAACACAACAAACACTCCTGGAAATGAAGCAAAAGTAGACAGAAAAAGCTGGCAAGCTTCTGCCATAGGGGCAATATCAACAGAAGCAATCATAGCAGAGAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACGGACGTGGAAGAGGGAAGTTTCAAGGCCGTTGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAAGATTATCAGAGAAAATCAGTGTCACAGAAAGAACTTCAAGCTTTAGCAATGAAACTTCTGGAGTTTTTCCAAGGGCATCACAAGAGTTAAAGGATGCTTTGTCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGAGTGTCCCATCGTGTATGCGAGCAGTGGATTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAAGAACTGTCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAAAATGGCAAAAGCTACTGCGGAAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTGCTGACAGTCACGCCTATCAAGGATGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGATAAAGCATTACGACCAAACGGATTGCCAAAGTCATTAATCCGATATGATGCTCGCCAGAAGGAAAAGGCAATGGGTTCGATCACAGAGGTTGTTCAGACTGTAAAGAATCCCCGATCTCATTATCGAGCAATGAGTCATGACACCACCAGAAAAAAAGAAGATTTGGAGAAGTTTAATCTTGACTATGTTCTTCCGAAGTCCATTCTAGCTGCAAATGCTACACCCTTAAGACAGACTCCTCAACAGGACCTGAGAGATGATGGTTTAGGCAAGAAACCTAGGTTATCAAGTCGGGTTTCTTTCACGGGGCTCAAAGGGAAGTCTCTAAGCAGTTCAAGGAAGCTTGAAGTAATAGCCTTTGAACCAGAAATTTTGATGACCGATGAAATCGAACGGACTGATAGTTGGGACCGTTCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAATTTTGTCATTACGGATCCAAGGCTTCCGGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGACACTGTCTCAAGGATAAGGGATGCAATTAGGGAACAAAGAGAAGTAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAGAAGTTCTGGAATTTGTTCCACTTGCAACCGATGCGAGATGAAATGGGAGAGCTTCAATATTTTATTGGTGTACAACTAGATGGAAGTGGTCATGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGTCAATTCATTCCCAACCAGTCTTCCCCAGGCCTCATAAGAAGCACAGTTCTTCTTGGACTGCTATACAGAAGATTATTCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATCAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGTATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCACTACACACGTTTGTTTGATAACCGACTTTTGTGCTGGTGGGGAGTTGTTTGCATTACTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCTGAGGTCGTCATTGGCTTGGAGTATCTTCACTGTCTAGGAATCATTTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACACTTGCTGACTTCGATTTATCACTTGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCACGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCGATCACGCAATCAAATTCTTTCGTTGGAACTGAAGAGTATATTGCTCCTGAAATCATAACAGGGGAAGGTCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACCTTTCCCAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTTCAAAGAGACCCCACCAGACGTTTAGGTTCGAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTCTTCCAATCAATCAACTGGCCGCTGATCCGGTGTACGGTCCCGCCACCATTAGAATCGCCTCTTCATCTTACTGGGAAAGGTGAAAAAGACAAGAACGTAAACTGGGAAGATGATGGGGTGCTTAGCTCAGTGGATATGGATTTTTTCTGA 2769 43.77 MEDKGGISSNKPAEKWMAFDRESNTTNTPGNEAKVDRKSWQASAIGAISTEAIIAERAAEWGLVVETDVEEGSFKAVGRASGEGGGSKRLSEKISVTERTSSFSNETSGVFPRASQELKDALSSLEQTFVVSDATKPECPIVYASSGFFGMTGYASEEVIGKNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKNPRSHYRAMSHDTTRKKEDLEKFNLDYVLPKSILAANATPLRQTPQQDLRDDGLGKKPRLSSRVSFTGLKGKSLSSSRKLEVIAFEPEILMTDEIERTDSWDRSERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVSRIRDAIREQREVTVQLINYTKTGKKFWNLFHLQPMRDEMGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLVKATAENVDEAVRELPDANLRPEDLWSIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETTTHVCLITDFCAGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPTRRLGSSTGANEIKQHPFFQSINWPLIRCTVPPPLESPLHLTGKGEKDKNVNWEDDGVLSSVDMDFF 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3167759 3178102 - CmaCh20G006920.1 Cma20g00692 316506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00692 922 ProSiteProfiles PAS repeat profile. 386 459 IPR000014 -
Cma20g00692 922 ProSitePatterns Protein kinases ATP-binding region signature. 593 616 IPR017441 GO:0005524
Cma20g00692 922 MobiDBLite consensus disorder prediction 1 35 - -
Cma20g00692 922 Gene3D PAS domain 375 539 - -
Cma20g00692 922 ProSiteProfiles Protein kinase domain profile. 587 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00692 922 CDD PAS 401 501 IPR000014 -
Cma20g00692 922 MobiDBLite consensus disorder prediction 20 34 - -
Cma20g00692 922 Gene3D Transferase(Phosphotransferase) domain 1 671 891 - -
Cma20g00692 922 CDD PAS 141 230 IPR000014 -
Cma20g00692 922 Gene3D PAS domain 128 299 - -
Cma20g00692 922 SUPERFAMILY Protein kinase-like (PK-like) 563 894 IPR011009 -
Cma20g00692 922 ProSiteProfiles PAC domain profile. 188 242 IPR000700 -
Cma20g00692 922 TIGRFAM sensory_box: PAS domain S-box protein 411 501 IPR000014 -
Cma20g00692 922 TIGRFAM sensory_box: PAS domain S-box protein 140 231 IPR000014 -
Cma20g00692 922 SMART serkin_6 587 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00692 922 PANTHER BNAA02G07840D PROTEIN 85 920 - -
Cma20g00692 922 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 227 IPR035965 -
Cma20g00692 922 Pfam Protein kinase domain 589 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00692 922 ProSiteProfiles PAS repeat profile. 114 187 IPR000014 -
Cma20g00692 922 SMART pac_2 463 505 IPR001610 -
Cma20g00692 922 SMART pac_2 191 233 IPR001610 -
Cma20g00692 922 PANTHER FLIPPASE KINASE 1-RELATED 85 920 - -
Cma20g00692 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Cma20g00692 922 Gene3D Phosphorylase Kinase; domain 1 586 670 - -
Cma20g00692 922 CDD STKc_phototropin_like 585 893 - -
Cma20g00692 922 SUPERFAMILY PYP-like sensor domain (PAS domain) 402 501 IPR035965 -
Cma20g00692 922 Pfam PAS domain 409 501 IPR000014 -
Cma20g00692 922 Pfam PAS domain 135 231 IPR000014 -
Cma20g00692 922 SMART pas_2 116 185 IPR000014 -
Cma20g00692 922 SMART pas_2 388 457 IPR000014 -
Cma20g00692 922 ProSiteProfiles PAC domain profile. 460 514 IPR000700 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00853 Cma-Chr2:4972923 Cma20g00692 Cma-Chr20:3167759 0 dispersed
Cma19g00829 Cma-Chr19:7872965 Cma20g00692 Cma-Chr20:3167759 0 dispersed
Cma20g00451 Cma-Chr20:2135318 Cma20g00692 Cma-Chr20:3167759 9.03E-06 dispersed
Cma20g00692 Cma-Chr20:3167759 Cma11g01457 Cma-Chr11:9603199 3.88E-110 dispersed
Cma04g01630 Cma-Chr4:8216817 Cma20g00692 Cma-Chr20:3167759 4.51E-25 transposed
Cma02g00309 Cma-Chr2:1464696 Cma20g00692 Cma-Chr20:3167759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69396 PF00069 Pkinase 9.50E-62 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00692 K20715 - csv:101215355 1687.93