Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00699 ATGATAGGAATGGACAGTGATTTGAACAAAACAACTTACTGTGGGAACAACTTTGTTGCGCTGAGTAACGACAGCAAACAAAACATTGACAGGCATTCCCGAGCCGAGATGGGATCGTTCGGCGAGAGAACCATACTTGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCTATTGAGCATAGTTCGTCATTGGGTGGTGGTTCGCAGAAACTTTGTTATGGAAACATGAAGAACAGGGTATTTCACAGCATTAAGGTTGTTGTCTTCTCTGCTAAGATCAACTTTCTCATGCCTTTTGGGCCATTAGCAATATTAGTCAGCAGTTTGACTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAACGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATACGCATTGCGAAGAGGAATGATACGCGTCGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAACATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAATTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCATCTGCTACTGTAAATTCTGGATTGCTGTTAATGGCGGTAATGGGACTTCTATTTCCTGCTGTTCTTCGTTCCACACATACAGAGTTGCACTCTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGCGATAAGAACTTATATCTCCCCGTTACTGAGGAGGATACAGAAGAGAATTTGGATGACGAAGACGCCCCCGAGATTTCTATGTGGGAATCCATTATTTGGCTGTTTATCTTGACCATTTGGATCTCCGTCCTCTCAGAATACTTGGTTAATGCAATAGAGGGGGCGTCGGTTGTCATGAACATACCGGTGGCGTTCATTAGCGTTATCCTACTACCCATTGTTGGGAATGCGGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCAATAGGATCGTCCACACAGATATCAATGTTCGGGATTCCTTTCTGTGTGGTCATTGGTTGGATCATGGGATGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTTTTCATCACGGTCATCGTTGTGGCCTTCATGTTGCAGGATGGAACTTCCAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATGTTGATCCAGCGTCAGTTGAAGACAAGACCCGAAAACATCGTACAACCATTGGCAATAGGTTGGTGCTGATTTTGTTTATCATTGCAAGCTGTGGAAAATACTCTGGATCTTACCAACTAGGAGTGCTAGAAATCAAGTTATTTCGGAGAGCTTTGGGGTTTTGCTGTTTCTCTACTCGGAGCTTAGATACCAACGTTGAAATGTCGGGTCGGGCTGATGTGGGAAGGGATCGGTATCGGAAAGATTCGTCGAGATATGATGAGAAGTCGCAGTCTGGGCATAGCAATAGCAGTAATCCTCCGTCGAGACACCTCTGGGTCGGAAATTTGTCTCATGCTATAGTGGAGCGCGATCTAAGTCGCTACTTTTCACAGTTTGGTGAGCTCGACAGAATTGCTTTCCAGCCCAATCGGAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCAATGGAAGCCATGAGAGAGCTTCAAGGTTTTGCTATTGGAGGGAATCCCATTAAAATTGAGTTTGCCAAGGCGGATAAGCCATCTGTATCATCCCGCGATGAAGACTATTCTCAACACCGAGAGGAAAAATCTTATGGAGCGAAGGGTTCCTTCTCTCAGGGACGACATGCTAGTCCTGACTATTCTCAACACCGACATGCTAGTCCTGAAAAGTCCAAAATAAGCGATAAAAATACAGAGCCCAGTGAAGTGTTATGGATAGGATTTCCGGCTTTAATAAAAGTGGATGAAACGATATTAAGGAAGGCCTTTTCACCGTTTGGGGAAATTGAGAAGATTACAACATTCCCTGGTCGAACATATGCTTTTGTTCGTTTTCGGGTTGTGTCATCAGCTTGGAGGGCTAAAGAGACTCTACAGGGGAAGCTATTTGGAAATCCCCGAGTACACATTTGTTTTGCAAGAAGTGATTCTGGTTCATCAAACGATGGAAGGAGCTCATCGAATGCACCTCCTTCTCCAAGATCTCCTCACCTTTTCTCAAATTTTGATTCTGGAGAATTTGATTCCCGTGGTCTTAATAGGAAAAGTAATTTATGGACTAGTGAGAACAGTGCGTTTGAAATGAAGAGGTCTGGAGAATTCTCATCAAAATTAGGTCCATCCCAAGATAGATACGAACATGGTAGTCCAACAAAAGAGAGAGGTCCTCATTTAAATAAATTTCCTCAAAGATTTTCTCAACCTCCATTTTATGAAGATCCATGGGACTTACCAGAGGATACGAATTTGTATCAAGGGTCCAAGAAATTGAAGATTGGATCCTTTCCCCACGATAAAGAGCTCCCTGAGTACCCATTATCTGATTTGGAACAAGATAAACGTATCATTCGAAAGTCATACACTGATTTTTCCTCCTCAGAAACATTTGATCATACGATGAAGTCTGGGCCACCTCTGGGGTATAAACAGACTCCTGATCGGCCTATAACAATGTCAGTCCCTTATGATCGACCTATAACAATGTCAGTCCCGTATGATCGGCCTATAACAAAGTCAGTCCCTTATGAAGAAAAGAGTGAACACTGGAGGGAACCATATGATAATTTTCAGGTTCCTGAGTCTCTGCCACCCAATGCTGTTGCAAGGAAAAGGTTCTCTCCTGATTCAGAACGGTCATCTATAAAAGAGTGGAAATGGGAGGGAACTATTGCAAAGGGAGGAACACCTGTTTGTCGTGCTCGCTGCTTTCCTGTGGGAGAGGTTCTGGATATGCTATTGCCAGAGTTCTTAGATTGTACTGCAAAAACTGGTCTAGACATGCTCTCAAAGCATTACTATGAAGCAGCCAGTGCTTGGGTTGTTTTCTTTGTACCTGAAAGCGATGCTGACATCGCATTCTACAATGAATTCATGAACTATCTTGGTGAAAAGCAACGAGCAGCAGTTGCCAAGTTGGATGACAGAACCACCATGTTTCTTGTTCCGCCATCCGAGTTTTCAGAAAAAGTGCTCAAAGTACCAGGTAAATTGAGCATTTCAGGAGTTGTTCTGAGGTTAGAGCGTGCTGGTATGAGTGCAAGGCCTCCTCCATATCAAAACGAAACGAAAGACACAAGCTTGTTACCTTTACATAGTGAAACATTATATACCAACTTACAGACGTCTACAGGTGTTTTTGCCCCAGTATCATCTTTATCCTATCTCAGTAAAGCAGGAATCAATCATACATCATTGCCTAGGAATGTTGCTACTTCAGCATCGCCCGTGTTATTTCATGGCTCAGGGCAGTCTGTTGGAAGTTTGTCTGATCCATATATTGAGAACAGGCATGAGTATCCAATTCAACAGCAGCAAAATGCCAATGGACCGAACCCGACTCACCATCTACAAAACTCGATGTTTGATACTCGAAATATCCCATCACAAGCTTCGAACAATTCAATGGATTCTGTTATTCAGGAACGTCATTTAATCATTCCAAGGGAAATTCAGGAAACAGGCTCCAGTAATTATACAGTTGGAATTTCTTCTGTTACATCTGGAAATGCTTTATTATCTACTCAACAAGAAATAAACCCGGCCGCCTCTTTGGCTACAACTCTTTCCTCCCTTCCGCCAGACCAACTGGCACAATTAGCATCATCTCTGCTTGGGCATCAAAGGCAGCCGGGGAGTATGCCAAATGCAACCATGGCTGAAGAATTGAGGCATCGAAACGAATCGGTTGTGCCATTGGCAAGGTCCCAAAATGGCTCTTTCCACACTAATCTGATGAACTCTGAGCCTCAGACATCTCAAATTGTTCAAGTTCAACAGATGCAGCAGCATGTACAACAACACCAGATGTCAAACATGCCTGCAGGGCAACTTATGGCACAAAGGGAGCTTCAGATGGAGGCTTTAGGCAATGATCAACAGGTTCAAAACTCCGATGTTCGTGGCGAAGCAGAAGCAGACGCAGATCCGCAGAAACGCCTGCAAGCTACACTTAAGCTGGCAGCTGCTCTTCTCCAGCAAATTCAACAAGGAAAGGGAAATGATGTGAAGAAATCAACAGATTCTAAGGGGGAATTGACGAATGCCAAAGCATGCATCATCAGCCACTTGCCAGCAGTAATATTTGCTATCCCAAGTAACAAGCCTTTTTTTTTTTCACTAAATTTGTTCATAAGATGTTGA 4500 43.22 MIGMDSDLNKTTYCGNNFVALSNDSKQNIDRHSRAEMGSFGERTILEFEDESLVSPVSLNRKNFSIEHSSSLGGGSQKLCYGNMKNRVFHSIKVVVFSAKINFLMPFGPLAILVSSLTGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKASATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVTEEDTEENLDDEDAPEISMWESIIWLFILTIWISVLSEYLVNAIEGASVVMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHVDPASVEDKTRKHRTTIGNRLVLILFIIASCGKYSGSYQLGVLEIKLFRRALGFCCFSTRSLDTNVEMSGRADVGRDRYRKDSSRYDEKSQSGHSNSSNPPSRHLWVGNLSHAIVERDLSRYFSQFGELDRIAFQPNRSYAFINFRRDEDAMEAMRELQGFAIGGNPIKIEFAKADKPSVSSRDEDYSQHREEKSYGAKGSFSQGRHASPDYSQHRHASPEKSKISDKNTEPSEVLWIGFPALIKVDETILRKAFSPFGEIEKITTFPGRTYAFVRFRVVSSAWRAKETLQGKLFGNPRVHICFARSDSGSSNDGRSSSNAPPSPRSPHLFSNFDSGEFDSRGLNRKSNLWTSENSAFEMKRSGEFSSKLGPSQDRYEHGSPTKERGPHLNKFPQRFSQPPFYEDPWDLPEDTNLYQGSKKLKIGSFPHDKELPEYPLSDLEQDKRIIRKSYTDFSSSETFDHTMKSGPPLGYKQTPDRPITMSVPYDRPITMSVPYDRPITKSVPYEEKSEHWREPYDNFQVPESLPPNAVARKRFSPDSERSSIKEWKWEGTIAKGGTPVCRARCFPVGEVLDMLLPEFLDCTAKTGLDMLSKHYYEAASAWVVFFVPESDADIAFYNEFMNYLGEKQRAAVAKLDDRTTMFLVPPSEFSEKVLKVPGKLSISGVVLRLERAGMSARPPPYQNETKDTSLLPLHSETLYTNLQTSTGVFAPVSSLSYLSKAGINHTSLPRNVATSASPVLFHGSGQSVGSLSDPYIENRHEYPIQQQQNANGPNPTHHLQNSMFDTRNIPSQASNNSMDSVIQERHLIIPREIQETGSSNYTVGISSVTSGNALLSTQQEINPAASLATTLSSLPPDQLAQLASSLLGHQRQPGSMPNATMAEELRHRNESVVPLARSQNGSFHTNLMNSEPQTSQIVQVQQMQQHVQQHQMSNMPAGQLMAQRELQMEALGNDQQVQNSDVRGEAEADADPQKRLQATLKLAAALLQQIQQGKGNDVKKSTDSKGELTNAKACIISHLPAVIFAIPSNKPFFFSLNLFIRC 1499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3216684 3233311 - CmaCh20G006990.1 Cma20g00699 316513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00699 1499 MobiDBLite consensus disorder prediction 631 652 - -
Cma20g00699 1499 MobiDBLite consensus disorder prediction 533 558 - -
Cma20g00699 1499 TIGRFAM cax: calcium/proton exchanger 105 453 IPR004798 GO:0006816|GO:0015369
Cma20g00699 1499 SUPERFAMILY RNA-binding domain, RBD 657 773 IPR035979 GO:0003676
Cma20g00699 1499 SMART rrm1_1 559 626 IPR000504 GO:0003723
Cma20g00699 1499 SMART rrm1_1 690 758 IPR000504 GO:0003723
Cma20g00699 1499 MobiDBLite consensus disorder prediction 629 683 - -
Cma20g00699 1499 PANTHER VACUOLAR CATION/PROTON EXCHANGER 29 465 - -
Cma20g00699 1499 Pfam SPOC domain 999 1114 IPR012921 -
Cma20g00699 1499 Gene3D - 672 777 IPR012677 -
Cma20g00699 1499 MobiDBLite consensus disorder prediction 913 935 - -
Cma20g00699 1499 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 29 465 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cma20g00699 1499 Pfam Sodium/calcium exchanger protein 123 278 IPR004837 GO:0016021|GO:0055085
Cma20g00699 1499 Pfam Sodium/calcium exchanger protein 311 450 IPR004837 GO:0016021|GO:0055085
Cma20g00699 1499 Gene3D - 151 292 IPR044880 -
Cma20g00699 1499 Gene3D - 296 454 IPR044880 -
Cma20g00699 1499 Gene3D - 535 637 IPR012677 -
Cma20g00699 1499 MobiDBLite consensus disorder prediction 819 860 - -
Cma20g00699 1499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 688 762 IPR000504 GO:0003723
Cma20g00699 1499 MobiDBLite consensus disorder prediction 761 786 - -
Cma20g00699 1499 SUPERFAMILY RNA-binding domain, RBD 545 639 IPR035979 GO:0003676
Cma20g00699 1499 MobiDBLite consensus disorder prediction 761 787 - -
Cma20g00699 1499 CDD RRM3_Spen 560 629 - -
Cma20g00699 1499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 558 630 IPR000504 GO:0003723
Cma20g00699 1499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 560 624 IPR000504 GO:0003723
Cma20g00699 1499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 701 754 IPR000504 GO:0003723
Cma20g00699 1499 MobiDBLite consensus disorder prediction 665 683 - -
Cma20g00699 1499 TIGRFAM caca2: calcium/proton exchanger 89 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00231 Cma-Chr6:1173067 Cma20g00699 Cma-Chr20:3216684 4.07E-99 dispersed
Cma06g00684 Cma-Chr6:3411459 Cma20g00699 Cma-Chr20:3216684 0 dispersed
Cma07g01054 Cma-Chr7:5607832 Cma20g00699 Cma-Chr20:3216684 1.14E-41 dispersed
Cma08g00192 Cma-Chr8:1079463 Cma20g00699 Cma-Chr20:3216684 1.24E-07 dispersed
Cma14g00908 Cma-Chr14:4709558 Cma20g00699 Cma-Chr20:3216684 2.09E-09 dispersed
Cma14g01228 Cma-Chr14:9748614 Cma20g00699 Cma-Chr20:3216684 0 dispersed
Cma17g00609 Cma-Chr17:5153865 Cma20g00699 Cma-Chr20:3216684 3.68E-14 dispersed
Cma20g00699 Cma-Chr20:3216684 Cma01g00022 Cma-Chr1:86530 1.21E-154 dispersed
Cma02g00318 Cma-Chr2:1525162 Cma20g00699 Cma-Chr20:3216684 0 transposed
Cma02g00317 Cma-Chr2:1513519 Cma20g00699 Cma-Chr20:3216684 0 wgd
Cma02g00317 Cma-Chr2:1513519 Cma20g00699 Cma-Chr20:3216684 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00699 - - cmos:111448578 1758.42