Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00703 ATGGGTTTCATGTGTGATTTTTGTGGGGCTCAAAAGTCGATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCGTGTGATCGGAATGTCCACTCGGCTAACGCCTTGTCGAAGCGTCATACAAGAACACTGTTGTGTGAAAAATGTCATACGCATCCTGCCGTGGCAAGATGTATTGATGAGAGGATTTCTTTGTGTCAAAATTGTGACTGGACGGGCCATGGCACATCTACCTCAGCTTCATCGTCACACAAGAGACAAGCCATCAATTGCTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTTCCCTCTGGAAATGATGCTTGTGAGACAGAGTTGGGATTGATGAGCATTGCAGAGACCGACTTGATGGGCGCTGGTCAAAAAATGCTTGGGTCAACTGAAGCCAGTGACGTTTGCAGCCGGGAAAAGTCAAATGTTTTGGATGGATCATCTTCACTCACTGATTTTCGCTCTAGGCCGCACACTTCAGGCCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACGAAAGTTGCTGGATTCTTCGGTGAAGGCGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAACTATTCAGTATGAGTCTTAATCATTCTGAAGAATTTTTCGAGAACGGTGGAATTGATAGCCTTTTCGACTCAAGAGGCCTTTCGTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGTTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGACTGCAGCAATGGTGCATCTGCTGACTCGGTGATGAGTACTAAAACTGAACCAATTCTCTATTTTAATTCAAGGCAAGCCCAATCGGGTGTGTCGTTTTCTGGCCTCCCTGGCGAGAGTAGTGTTGGTGAATATCAGGACTGTGGAGCCTCTTCAATGCTTCTAAGGGGAGAGCCTCCATGGTGTGTCCCTGGCACTGAAAGTTCCTTCCCATCTATTGAACGTAACAATGCTGTTCTGCGTTACAAGGAGAAAAAGAAGACGCGCAAGTTCGAGAAAACTGTGAGATACGCCACTCGCAAAGTGAGAGCAGATGGCAGAAGACGTGTGAAGGGACGGTTTGTGAAGGCAGGAGAGGCCTATGATTGCGACCCACTGAACCGGACTAGAAGCTGCTGA 1230 46.75 MGFMCDFCGAQKSMVYCRSDAACLCLSCDRNVHSANALSKRHTRTLLCEKCHTHPAVARCIDERISLCQNCDWTGHGTSTSASSSHKRQAINCYSGCPSAAELSSIWSFVLDVPSGNDACETELGLMSIAETDLMGAGQKMLGSTEASDVCSREKSNVLDGSSSLTDFRSRPHTSGQPVELANVALPKFCCPGTKVAGFFGEGDDLYKEFDMDEMDLNLENYEELFSMSLNHSEEFFENGGIDSLFDSRGLSFEDSVCHSAVAAEGSSVGVVKPMQPDCSNGASADSVMSTKTEPILYFNSRQAQSGVSFSGLPGESSVGEYQDCGASSMLLRGEPPWCVPGTESSFPSIERNNAVLRYKEKKKTRKFEKTVRYATRKVRADGRRRVKGRFVKAGEAYDCDPLNRTRSC 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3247766 3251233 + CmaCh20G007030.1 Cma20g00703 316517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00703 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
Cma20g00703 409 CDD Bbox1_BBX-like 5 47 - -
Cma20g00703 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Cma20g00703 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Cma20g00703 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Cma20g00703 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma20g00703 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00837 Cma20g00703 CCT
Cma02g00242 Cma20g00703 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00151 Cma-Chr2:708702 Cma20g00703 Cma-Chr20:3247766 3.09E-59 dispersed
Cma06g01679 Cma-Chr6:10350471 Cma20g00703 Cma-Chr20:3247766 1.56E-12 dispersed
Cma11g01841 Cma-Chr11:12284810 Cma20g00703 Cma-Chr20:3247766 3.64E-11 dispersed
Cma14g01442 Cma-Chr14:11042400 Cma20g00703 Cma-Chr20:3247766 4.26E-13 dispersed
Cma20g00636 Cma-Chr20:2965397 Cma20g00703 Cma-Chr20:3247766 3.30E-70 dispersed
Cma20g00703 Cma-Chr20:3247766 Cma11g00415 Cma-Chr11:2035908 1.02E-07 dispersed
Cma18g00990 Cma-Chr18:8348435 Cma20g00703 Cma-Chr20:3247766 4.51E-29 transposed
Cma11g01303 Cma-Chr11:8677273 Cma20g00703 Cma-Chr20:3247766 1.38E-171 wgd
Cma19g00837 Cma-Chr19:7927917 Cma20g00703 Cma-Chr20:3247766 1.14E-175 wgd
Cma02g00242 Cma-Chr2:1075294 Cma20g00703 Cma-Chr20:3247766 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37027 PF06203 CCT 8.80E-16 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00703 - - csv:101216401 680.633