Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00706 ATGGCAGAGTGTGGCAGAAGAGACAGAAAGCTAACCAGGAGCCGGAGAGGTAGGTTTGGGGTTTGTCAAGCTCCAGAGCTTTACAGGAAGAAGAAGGAAGCTGCTGTGTGTATAAAACCACCCAAAAAGAAAACCCTCTTTGTCATTAACAAAACATGCAAAAACGGAAACAAACCTCTCAACGATTCTGTGAATCGCGATCATCTCTTAGCTCTTCCTCTTGTTAATCTCTCTTCTTCTCATCCTTCGCCGGCGAGCCTCACAGATTTTGATATCAACAAAAGGATCAAACTACAGAACCGTTTGAACTCAGAACTCAGAAGTGACTTCTTATACATTCTACTGATCTTCTTTGATTCATCTGAGCTGATCCCAGTTCTTCATATTTCAAACAAACTTATGGGTCTGTCCAGCCTTCCTGCGCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACGGCCCTATCGATATCTATCTTCAAAGGCATAGTTCGGTCGATTCTTCATGTTGTTGGCATCCATCTCTCGTCGCCTACATTACCATCCTCGCCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAACCCGAATGGAAATTACATCGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTTAACAAAGTTCACAGCTGCAAATTGCTCGAACATGACTGCTCTGTCTGCCTAACCCAGTTTGCACCTGATTCAGAGATAAACCATTTATCTTGTGGTCATCTTTTCCATAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACATGTCCTCTGTGTCGAACTCCGTTCATGCCCGAAGAAGACACAGCTTCCTGCTTCTGGTGA 864 44.56 MAECGRRDRKLTRSRRGRFGVCQAPELYRKKKEAAVCIKPPKKKTLFVINKTCKNGNKPLNDSVNRDHLLALPLVNLSSSHPSPASLTDFDINKRIKLQNRLNSELRSDFLYILLIFFDSSELIPVLHISNKLMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPTLPSSPDSMENAPESIEFHLNPNGNYIEEFRSRIPAILFNKVHSCKLLEHDCSVCLTQFAPDSEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPFMPEEDTASCFW 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3255362 3257308 + CmaCh20G007060.1 Cma20g00706 316520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00706 287 ProSiteProfiles Zinc finger RING-type profile. 231 273 IPR001841 -
Cma20g00706 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 278 IPR013083 -
Cma20g00706 287 SUPERFAMILY RING/U-box 222 279 - -
Cma20g00706 287 Pfam Ring finger domain 230 273 IPR001841 -
Cma20g00706 287 PANTHER - 134 287 IPR044249 -
Cma20g00706 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 134 287 - -
Cma20g00706 287 SMART ring_2 231 272 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00241 Cma20g00706 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00241 Cma-Chr2:1070702 Cma20g00706 Cma-Chr20:3255362 1.61E-96 dispersed
Cma19g00840 Cma-Chr19:7939558 Cma20g00706 Cma-Chr20:3255362 9.35E-21 dispersed
Cma20g00706 Cma-Chr20:3255362 Cma07g00520 Cma-Chr7:2245525 2.20E-11 dispersed
Cma11g01306 Cma-Chr11:8687050 Cma20g00706 Cma-Chr20:3255362 1.18E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00706 K16285 - csv:101216645 298.901