Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00708 ATGAGTGGTGGCCGGCAGCGGACCCTCGGAGTTGGGGTTCAGCATGTTTTAGACCATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTATATTATGCAGTTCAGGGCGATGGTGATCAGTCTGGAGGGAATATATTTTGGGCAGATGCAACGTCTAGAATGAATTATTCATACTTTGGTGACACCGTTGTATTGGATACAACATTTAGAAAAAAACAGTATAGGGTGCCTCTTGCTGCGTTTACAGGGTTTAATCATCATGGTCAGCCAGTGTTGTTTGGATGTGCATTGGTTCTTCATGAGTCTGAATCTTCATTCATTTGGCTCTTCCAAACTTGGCTTCAAGCAATGTCTGGACGCCAACCAATTTCCATTACAACTGACCCAGAGAGGCTTATCCAGGTTGCTGTTGCGCAGGTTCTTCCAGGTACCCGACATCGTTTTTGCAAGTGGGCTATATTCAGAGAGACACTAGAGAAGTTGTCTCATCTCTGTCAATCTCATCCTACTTTCGAAACTGAATTTAGAAAATGTGTTAATGAGGCTGAGACAATTGAAGAATTTGAGTCCTGTTGGGAATCCCTTCTGAATAGATATTACATTATGGATAATGACTGGCTTCAGTTAATGTATAGTGCTAGACAACAGTGGGTACCCGTTTACATGAGGGATACTTTCTTTGGAGAACTGTCAATAAATGAGAGCTATAAGAGTTTGAATTTGTTTTTCGATGGATATGTTACTGCATCCACCACGATACAGATGTTGGTTAGGCAGTATGAAAAGGCAATGGCAAGCTGGCATGAAAAAGAATTAAAAGCTGATTATGACACAACTAACTCTATGCCAGTTCTGAAAACACCATCTCCAATGGAAAAACAGGCTGCAGATCTATATTCGAGGAGGATATTCAGAAAGTTCCAGGAGGAATTGGTAGAAACTCTTGCCAATCCTGCTACCAAAATTAACGACTCAGGAACCGTTGCCACTTATCGAGTTGCAAAATTTGGTGAAGACCATAAAGCACATGCTGTCAGTTTTAATTCATTTGAGATGAAAGCTAATTGCAGCTGTCAACTGTTTGAATACTCGGGAATAATTTGCAGGCATATATTAGCAGTTTTTAGGGCAAAAAATGTTCTTACACTTCCTTCCCAATATGTATTGAAACGGTGGACCAGAAATGCCAGAAATGGAGATGCAATAGATGACCATAATTCTGAATTACCAAATGAAGCTGGAGATTCTTCGACTGTTAGGTACAATAAGCTTCGTCAAGAAGCAATCAAGTACGTTGAGGAAGGAGCAAAGTCAATTCATATTTATAACGCGGCGATGGATGCCCTAAAAGAGGCCTCTAGAAAGGTTGCAGCTGTGAAGAACCGGGGCCCTGGAGCTACTAATGGTGATATTATGGCCAATGGAGTTGTTGGGGCTTTGATTGCAACAGAAGAGGATCAGACAGCAACCTATCAATCTGTGGAACAGAAGGAGAAGAAAATTCGTGAGCTTTCTGCAGAGTTAGAAAGAACAAATCAACGTTGTGAAGTGTACAGAGCAAATCTCCTAGCTGTTCTAAGGGACATGGAAGAGCAGAAGTTGAAGTTATCTGTGAAGGTCCAGAATGCGAGGCTTAGTTTGAAAGAATGA 1650 41.52 MSGGRQRTLGVGVQHVLDHLKRMQAENPALYYAVQGDGDQSGGNIFWADATSRMNYSYFGDTVVLDTTFRKKQYRVPLAAFTGFNHHGQPVLFGCALVLHESESSFIWLFQTWLQAMSGRQPISITTDPERLIQVAVAQVLPGTRHRFCKWAIFRETLEKLSHLCQSHPTFETEFRKCVNEAETIEEFESCWESLLNRYYIMDNDWLQLMYSARQQWVPVYMRDTFFGELSINESYKSLNLFFDGYVTASTTIQMLVRQYEKAMASWHEKELKADYDTTNSMPVLKTPSPMEKQAADLYSRRIFRKFQEELVETLANPATKINDSGTVATYRVAKFGEDHKAHAVSFNSFEMKANCSCQLFEYSGIICRHILAVFRAKNVLTLPSQYVLKRWTRNARNGDAIDDHNSELPNEAGDSSTVRYNKLRQEAIKYVEEGAKSIHIYNAAMDALKEASRKVAAVKNRGPGATNGDIMANGVVGALIATEEDQTATYQSVEQKEKKIRELSAELERTNQRCEVYRANLLAVLRDMEEQKLKLSVKVQNARLSLKE 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3264879 3268371 + CmaCh20G007080.1 Cma20g00708 316522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00708 549 PANTHER PROTEIN FAR1-RELATED SEQUENCE 9 7 522 - -
Cma20g00708 549 Coils Coil 526 546 - -
Cma20g00708 549 Pfam SWIM zinc finger 333 379 IPR007527 GO:0008270
Cma20g00708 549 ProSiteProfiles Zinc finger SWIM-type profile. 331 379 IPR007527 GO:0008270
Cma20g00708 549 Coils Coil 442 462 - -
Cma20g00708 549 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 7 522 IPR031052 GO:0006355
Cma20g00708 549 Pfam MULE transposase domain 63 154 IPR018289 -
Cma20g00708 549 Coils Coil 491 521 - -
Cma20g00708 549 SMART 26again6 354 381 IPR006564 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00708 - - - csv:101214237 1039.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00708 Cma-Chr20:3264879 Cma16g00494 Cma-Chr16:2527030 5.60E-110 dispersed
Cma11g01315 Cma-Chr11:8739741 Cma20g00708 Cma-Chr20:3264879 0 wgd
Cma19g00822 Cma-Chr19:7848454 Cma20g00708 Cma-Chr20:3264879 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00708 Cma_Chr20 FPKM 11.445661 9.909664 12.665189 11.783084 11.256618 9.843309 12.419908 14.488653 11.89436 13.362035