Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00716 ATGCGCTTCTCAAATATCCACTCTGGTTTGAGGCTCTCCAATTCGATTTCAACCATCAAAGAAGCATCATCTTCCAGAAAATGGCAAGAAGCTCTCCAACTTTACCGTGAAATCAGACTCTCTGGATCTCAATTGCCAGACTCTTCGGTGCTCCCTTCGATTCTCAAAGCATGTTCCAACGTTTCTTTCAAACTTGGAACTGCTATGCACGGATGTCTGATCAAACAAGGATGCCAATCTTCCACTTCCGTTGCTAATTCCACTATTGACTTGTATATGAAATGGGGTGATTTGGATTCCGCACACCGCGCTTTTGTTTCTCTGAAGAACAAGGATTCGGTGTCTTGGAACGTGATGGTTCATGGGAATTTCTCAAATGGGGGCGTAGTGGCAGGCTTGTGGTGGTTTAAAATGGCCAGATTCGCCAATTTTCAGCCCAATGTTGCTTCGTTGGTACTTGTAATTCATGCATTTCGTGAGCGTAAATCATATAGTGAAGGCTTTGCGGCTCATGGTTATATAATTCGCTCTGGTTTCTCTGCCATTCTTTCGGTTCAAAACTCTCTGTTGAGCTTATATACTGAAGTTGATTTGTTTCTTGCCCACAAACTGTTTGATGAAATGTCTGTGAGAAATGATATTGTTTCCTGGAGTGTGATGACAGGAGGTTTTGTGCAAATTGGGGAAGATGAACATGGGCTGCTGATGTTTCGAGATATGGTGACAGTGGCTGGCATTTCACCTGATGGGGTAACCATTGTAAGTGTTCTAAAAGCTTGCACCAACTTGAGAGATATTTCACTTGGAACAATGGTGCATGGATTGGTGGTTTGTAGGGGCTTGGAAGATGATTTATTTGTTGGGAACTCTTTGATAGACATGTATTCCAAATGTTCTAAGGTTCATTCTTCATTTAAAGCTTTCAAGGCGATGCCTGAGAAGAATATCGTCTCGTGGAATTCGATGTTGTCGGCGTATGCTCTCAACGAGAAGCCTTTGGAAGCTGCGGCGTTGCTTAGGACAATGGTGGAAGAAGGAGTTGAGAAAGATGAGGTGACTTTTGTGAATGTTCTTCAGATAGTTAAACAGTTTCTGGATTCGTTACAATGCAGGTCTGTACACAGCGCGATTATACGGCGGGGATATGAATCGAATGAATTGGTGATGAACTCTGTGATTGATGCTTATGCGAAATGCAATCTGATTGAGCTTGCAGGCATACTTTTTGATGGAATGAAGAAAAAAGATGTAGTTACTTGGAGCACCATGATTGCAGGCTTTGCCTACAATGGCGATCCCGACAAAGCGATATCGATCTTCAAGCGAATGAATGAAGAGGTGAAACCGAACAAGGTATCGATTATGAATCTTATGGAGGCTTGTGCTGTCTCTGCTGAATCGAGACAATTGAAATGGGCTCACGGTATAGCTGTTAGAAGATGTTTGGCTAGTGAAGTAGCTGTTGGGACTGCCATTATTGACATGTATTCAAAATGTGGAGATATAGCAGCCTCCATTAGAGCCTTCAACCAAATCCCAGAAAAGAATGTCGTCTGTTGGAGCGCTATGATATCTGCCTTCGGCATCAACGGTCTCGCGCACGAAGCGTTAATTTTGTTCGAAAAGATGAAACAAAACGACATGAAGCCGAATGCTGTGACCGCCCTGTCAGTGCTGTCTGCTTGTAGCCATGGAGGACTAGTGGAAGAAGGGTTCTCTTTTTTCACATCCATGGCGAAGAAACACAAAATTACACCTGGTTTGGAGCATTACTCATGCGTCGTCGACATGTTAGCCCGAGCGGGGAAATTCAAAGACGCATTAGAGTTGATTGAGAAGATGCCTGAAGAAATGGAAGCAGGGGCCAGCATTTGGGGGACACTATTGAGCTCTTGTAGGAGCTATGGAAACATTGTGCTTGGCTCAGGAGCGGCCTCTCGTGTTCTTGAACTCGAACCGTTGAACTCGACTGGCTACATGCTTGCGTCGAACTTGTATGCGAACTGCGGGCTAATGAGTGATTCTGCGAAGATGAGGAGGTTGGCTAAAGAGAGAGGAGTCAAGGTTATTGCTGGATATAGTTTGGTGCATATTAATTCACTGAGTTTGAGATTTGTTGCTGGAGATGAGTTCAATCCAAGAGCTGATGAGATTTATTTAATGGTTGAACAATTGCACAGTGTAATGAAGATTGATTATTTGCAAGTTCTAGATGCTCTTCTCAGCATCTAG 2232 43.59 MRFSNIHSGLRLSNSISTIKEASSSRKWQEALQLYREIRLSGSQLPDSSVLPSILKACSNVSFKLGTAMHGCLIKQGCQSSTSVANSTIDLYMKWGDLDSAHRAFVSLKNKDSVSWNVMVHGNFSNGGVVAGLWWFKMARFANFQPNVASLVLVIHAFRERKSYSEGFAAHGYIIRSGFSAILSVQNSLLSLYTEVDLFLAHKLFDEMSVRNDIVSWSVMTGGFVQIGEDEHGLLMFRDMVTVAGISPDGVTIVSVLKACTNLRDISLGTMVHGLVVCRGLEDDLFVGNSLIDMYSKCSKVHSSFKAFKAMPEKNIVSWNSMLSAYALNEKPLEAAALLRTMVEEGVEKDEVTFVNVLQIVKQFLDSLQCRSVHSAIIRRGYESNELVMNSVIDAYAKCNLIELAGILFDGMKKKDVVTWSTMIAGFAYNGDPDKAISIFKRMNEEVKPNKVSIMNLMEACAVSAESRQLKWAHGIAVRRCLASEVAVGTAIIDMYSKCGDIAASIRAFNQIPEKNVVCWSAMISAFGINGLAHEALILFEKMKQNDMKPNAVTALSVLSACSHGGLVEEGFSFFTSMAKKHKITPGLEHYSCVVDMLARAGKFKDALELIEKMPEEMEAGASIWGTLLSSCRSYGNIVLGSGAASRVLELEPLNSTGYMLASNLYANCGLMSDSAKMRRLAKERGVKVIAGYSLVHINSLSLRFVAGDEFNPRADEIYLMVEQLHSVMKIDYLQVLDALLSI 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3303633 3305864 + CmaCh20G007160.1 Cma20g00716 316530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00716 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 446 IPR002885 -
Cma20g00716 743 Pfam PPR repeat family 515 563 IPR002885 -
Cma20g00716 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cma20g00716 743 PANTHER - 26 127 - -
Cma20g00716 743 PANTHER - 109 732 - -
Cma20g00716 743 TIGRFAM PPR: pentatricopeptide repeat domain 418 444 IPR002885 -
Cma20g00716 743 TIGRFAM PPR: pentatricopeptide repeat domain 518 552 IPR002885 -
Cma20g00716 743 TIGRFAM PPR: pentatricopeptide repeat domain 317 350 IPR002885 -
Cma20g00716 743 TIGRFAM PPR: pentatricopeptide repeat domain 591 616 IPR002885 -
Cma20g00716 743 Gene3D Tetratricopeptide repeat domain 270 365 IPR011990 GO:0005515
Cma20g00716 743 Gene3D Tetratricopeptide repeat domain 175 268 IPR011990 GO:0005515
Cma20g00716 743 Pfam E motif 635 696 IPR046848 -
Cma20g00716 743 Pfam PPR repeat 389 417 IPR002885 -
Cma20g00716 743 Pfam PPR repeat 418 445 IPR002885 -
Cma20g00716 743 Pfam PPR repeat 317 347 IPR002885 -
Cma20g00716 743 Pfam PPR repeat 590 616 IPR002885 -
Cma20g00716 743 Pfam PPR repeat 289 316 IPR002885 -
Cma20g00716 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 617 IPR002885 -
Cma20g00716 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Cma20g00716 743 Gene3D Tetratricopeptide repeat domain 490 700 IPR011990 GO:0005515
Cma20g00716 743 Gene3D Tetratricopeptide repeat domain 16 174 IPR011990 GO:0005515
Cma20g00716 743 Gene3D Tetratricopeptide repeat domain 366 487 IPR011990 GO:0005515
Cma20g00716 743 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 26 127 - -
Cma20g00716 743 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 109 732 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00716 - - - cpep:111776938 1395.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00298 Cma20g00716 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00716 Cma-Chr20:3303633 Cma13g00462 Cma-Chr13:5092393 2.99E-11 dispersed
Cma20g00716 Cma-Chr20:3303633 Cma18g00835 Cma-Chr18:7304105 1.86E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g287 . Blo15g00712 Bda06g00441 Bda08g00947 Bpe07g00674 . . Bma12g00880 . . Cma02g00298 Cma20g00716 Car02g00178 Car20g00615 . . . . . . . . . . . . . . . . . . . . Cone10ag1214 Lsi10g00829 . . . . . . . . . . . . Cmo02g00293 . . . . . . Cpe05g01338 . . . . . . . . . . . . . . . . . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013720 1 2 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 0 0 1 0 0 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00716 Cma_Chr20 FPKM 0.189516 0.336181 0.59511 0.739455 2.10377 2.966197 2.918867 0.841959 1.159447 1.133947