Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00717 ATGGAGAATGAATGTGGAGCGAAATTGATCGGAAATAATGGTTTGAGCCCACGTTCATCGGTTTCTAATGGCGGTCCAGATGGAACCGTCGATGTTCTTAAAGATTTGAAGAAAGCAAATGATTTAATCGAGGTTATTGGGGGTTTTTCTGGGTTTCGGAAAACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGATTGAAGATGCTCGCGCCGTTGTTGGAGGAGATTCGTGACCTTTATGATATGGTTCCTGCTGAGGGTTTGAGTTCCCATATTGGTCAATTGAAAGAGGCGCTTCTTTTAGCCAAAAGGTTGCTTAAAAATTGCCACAATGGGAGCAAGATTTATCTGGCGTTTGATAATGAGGCTGTGATGGCGAGATTTCATGCTGTTTATGACAAATTGAAGGAAGCCCTTGATGGGATACCTTATGATGAACTTGGAGTCTCTGTTGAACTGAAAGAACAAGTTGAGCTGATGTCGACGCAGCTCAAACGAGCGAAGTGTAGGAAAGATACACAAGATATGGAGTTAGCAATGGATATGATGGTTGTGTTCTCTAAAAATGATGAGAGAAATGCTGATCCTGTTATACTTGGAAGATTAGCAAATAAATTGGAACTACATAAGATTGCAGATTTGGAAGCCGAAACCGAAGCTATACAAAAGTTGGTTCAACGTAGATGTGTGTCGAATTCTGAAAGTCTCCAGCAAATTATGGAACTTCTATGCAAGTTTAAGAAAATTGCAGGTATGGAGAATAATGTTGCTTCTGGTGCTGCTCCTGTTGTGTTGAAACGTCTGCAACGGTGTCGGTCTACGTTAATCCCTCATGAATTCCTCTGTCCCATTTCGTTGGAAGTCATGACAGATCCTGTGATTGTGGCTACTGGGCAGACATACGACCGTGATAGCATACAGACATGGTTGAATTCGAACCACCAGACATGCCCAAAAACAGGACAAACTTTGGAGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAATGGTGTCAAAAGCACGACTATGAATTGCCGAAGAAGGAAGTAGGTTCTGGATTCGGCGATACTCCGCCTGATCTCGCTCGGGAAATCTCCTCTTTAGTTCACAATCTATCGTCGAGTCAGTTGGATGTTCAGAAAGAGGCTATCATCAAGATCCGTGTGCTCTCCAAGGAGAACCCCGAGAATAGAGTTTGGATCGCGAATAGCGGAGTCATCCCTCCATTGGTTAAGCTTCTATCCTACCCAGATCTCAATTTCCAAGAGCACACGGTGACCGCTCTATTGAACTTGTCGATCGACGACGCGAATAAAAGACTCATAGCAAGAGAAGGAGCCATTCCTGCTATCATAGAAATCTTGCAGCATGGAACAGAGGAGGCTAAGGAGAACTCTGCTGCTGCACTGTTTAGCTTGTCAATGCTAGATGAAAACAAGGTTCTGATTGGAACTCTAAAGGGAATCCCGCCATTAGTAGCGCTTCTTCGAGACGGTACGATCCGAGGGAAGAAGGATGCTGCTACTGCACTCTTTAACCTGTCGATGAATCAAGCAAACAAGTCCCGAGCGATCAAAGCCGGCATCATACAGCCCCTTCTCTTTTTACTTCAGGATAAGAACCTAGGGATGGTTGATGAAGCTTTATCGATCTTGTTACTCCTCGCATCACATCCTGAGGGACGGACCGAGATCGGACGTAACTCTTTCATTGAGATTCTAGTGAACATCATAATCGACGGGACACCGAAGAACAAGGAATGTGCCACGTCGTTACTTCTCGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCGCTGCAGTTTGGTGTATATGAACATTTGGTAGAGCTGACAAGATGTGGAACAAGTAGAGCCCAGAGAAAAGCAAGCTCCCTTTTGCAGTATATGAGCAAATCTAAGATGGTTCAGAAATCCATAGACTCCAAATTCAGTGAATATGGACATGGAAATTCTGGGAAGGACGTGCCTTCTCAGGAAAAGCAACTGCAGATTTCTGCAAAAAAGACAGCATTAAGGGACTTGCAAAATGATAATAGGGTCACAGCTTCCAATTGTACTGGAAGCTCTCCTCTTTTGAAGGAAAGAGGTCCGAGTAGTGACTTCATTAAAGTTTCTGGTAACAACCCAGCAACTCCGTCTCATCTCCATTCTTCGACTTCTAATGCTTCAAATGGGCATCTTGTTTACGTCCGTAGAAAGTCCGATGCCGATATTGGGAAGAATAGTCCTTGTGATAGTACAAACATAAAAGGTGATTATCCAAATCTAAGTAAACTCGGTCAACTAGCTGAAACTGCGCATCTCAAATCCCAGGTTAAGGAGCTACAGAATCATTGCTTTCCAGCATTTGCTCCTTTTCCAATGGTGTCTCCCATGAATGCTTCTGGAAAACCTTCAGTTCCTCATCACGTTGGAAAATATGGCATTAATTTCACCACAGCAGAATCGAACTTCCATCCTGCACCTTCTACTGTCCCTTCAGGATGGAAAAATTTGCAGTGGGAAGACAGATATCATCAGTTGCAATTGTTATTGAATAAATTGGACCAATCAGATCAACAAGATTATCTTCAGGTGCTTCGTTCGCTTTCATCGGTTGAACTTAGCAGACATGCAGTCGAATTGGAAAGGAGATCCATTCAGCTCTCGCTTGAAGAAGCAAAAGAGCTGCAGCGAGTTGGGGTTTTGAATGTGCTGGGAAATCCTGTAAAGAGTATCAAAACGCCGTTGACTCATCAAAACGGTTCAGAGACGTAA 2802 43.58 MENECGAKLIGNNGLSPRSSVSNGGPDGTVDVLKDLKKANDLIEVIGGFSGFRKTQSKECLNLVRRLKMLAPLLEEIRDLYDMVPAEGLSSHIGQLKEALLLAKRLLKNCHNGSKIYLAFDNEAVMARFHAVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILGRLANKLELHKIADLEAETEAIQKLVQRRCVSNSESLQQIMELLCKFKKIAGMENNVASGAAPVVLKRLQRCRSTLIPHEFLCPISLEVMTDPVIVATGQTYDRDSIQTWLNSNHQTCPKTGQTLEHLSLAPNYALKNLILQWCQKHDYELPKKEVGSGFGDTPPDLAREISSLVHNLSSSQLDVQKEAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGTLKGIPPLVALLRDGTIRGKKDAATALFNLSMNQANKSRAIKAGIIQPLLFLLQDKNLGMVDEALSILLLLASHPEGRTEIGRNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKASSLLQYMSKSKMVQKSIDSKFSEYGHGNSGKDVPSQEKQLQISAKKTALRDLQNDNRVTASNCTGSSPLLKERGPSSDFIKVSGNNPATPSHLHSSTSNASNGHLVYVRRKSDADIGKNSPCDSTNIKGDYPNLSKLGQLAETAHLKSQVKELQNHCFPAFAPFPMVSPMNASGKPSVPHHVGKYGINFTTAESNFHPAPSTVPSGWKNLQWEDRYHQLQLLLNKLDQSDQQDYLQVLRSLSSVELSRHAVELERRSIQLSLEEAKELQRVGVLNVLGNPVKSIKTPLTHQNGSET 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3308472 3316142 - CmaCh20G007170.1 Cma20g00717 316531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00717 933 SUPERFAMILY RING/U-box 277 352 - -
Cma20g00717 933 MobiDBLite consensus disorder prediction 716 740 - -
Cma20g00717 933 MobiDBLite consensus disorder prediction 658 740 - -
Cma20g00717 933 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Cma20g00717 933 Gene3D - 362 697 IPR011989 -
Cma20g00717 933 SMART arm_5 482 522 IPR000225 GO:0005515
Cma20g00717 933 SMART arm_5 606 646 IPR000225 GO:0005515
Cma20g00717 933 SMART arm_5 400 440 IPR000225 GO:0005515
Cma20g00717 933 SMART arm_5 523 563 IPR000225 GO:0005515
Cma20g00717 933 SMART arm_5 441 481 IPR000225 GO:0005515
Cma20g00717 933 SMART arm_5 564 604 IPR000225 GO:0005515
Cma20g00717 933 Coils Coil 151 171 - -
Cma20g00717 933 MobiDBLite consensus disorder prediction 669 708 - -
Cma20g00717 933 Pfam Armadillo/beta-catenin-like repeat 483 521 IPR000225 GO:0005515
Cma20g00717 933 Pfam Armadillo/beta-catenin-like repeat 400 439 IPR000225 GO:0005515
Cma20g00717 933 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 33 647 - -
Cma20g00717 933 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 351 IPR013083 -
Cma20g00717 933 Gene3D - 31 144 IPR036537 GO:0007166
Cma20g00717 933 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 494 IPR000225 GO:0005515
Cma20g00717 933 SUPERFAMILY ARM repeat 371 654 IPR016024 -
Cma20g00717 933 Pfam U-box domain 277 347 IPR003613 GO:0004842|GO:0016567
Cma20g00717 933 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Cma20g00717 933 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515
Cma20g00717 933 CDD RING-Ubox_PUB 281 323 IPR045210 -
Cma20g00717 933 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Cma20g00717 933 PANTHER U BOX DOMAIN-CONTAINING 33 647 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00410 Cma-Chr20:1964270 Cma20g00717 Cma-Chr20:3308472 6.47E-135 dispersed
Cma02g00297 Cma-Chr2:1384832 Cma20g00717 Cma-Chr20:3308472 8.69E-132 wgd
Cma20g00717 Cma-Chr20:3308472 Cma05g00979 Cma-Chr5:7892591 7.71E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00717 - - cmax:111483940 1249.57