Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00731 ATGGAGAAGAAGACACAGAGCAGTAGAAGAAGCCAACCCAAAAGCTCGGCCCGCGCGACGGTATTTGGGACCAACGCTCTTCAGCTAAGTGAGCACGATGCCTCGCGATTAGTCGGTGGAATAGTTGAAAAAGGTATCTCAGACGCTGAGCAAAGCAAGCCGTTTGCCTCGGTTGCCCCTCCCAGACCTTCCGTTTTGCCGTTTCCGGTCGCTCGGCATCGGTCTCATGGCCCGCATTGGGAATCAGTTACTAGTAAAATGGGTGGGGATAACATCAGAGATGACCGGCGGGGGGACGAGGAAGAAGATGAAAGATTGATGGAGATTGACTCTATAGCGAATTTTGCTAATCCAATACAAAGGAAAAAGAAAAGTAGCTTAGACTTTGGCAGGTGGAGAGAGGCTGTTCCAGGTCACAACCATGATGCAGCAAGCGGAGAGGAAAATAAAGTGGCAAGCTTAGCAAAAACTAAAAACCTAATTCGTGCCGGGGAAGCAAATAACACTAGGGATAATATGTCATGTGAGCCCTTATCAGCTGGTGTGCTTGCACCTTCTCTTATGAATATTGAAAATAGTTCGTCCGACTTTGTAAATAATCCCACTGGAAACAAGACAAACGCAGCTGGTTTAGAATTTGCGAGGTCAATGAATAACGTGGAATTGAAAGGGTTGGATAAACAACACATTCCAGAGAATCTTCAAGATGATTATGATCAATGGGGACGTATTTCAGAGAGTGAAGTTAAGGAGGGAGTTCCACTTGATGGTACTTCATTGCAGGACATGGCTACGAGGCTCCATCATTTGAATTCAGAAATGGTTCCTTGTTTTGAGTCCAATATTAAGGGAGAAGATGCATTCTCGACACTGGAGAGTCAGATTGATGCTGAGAATTGTGCACGAATACAAAGAATGTCACAAGAAGAGATTGCTGAAGCACAGGCTGAGATAATGGAGAAGATGAGCCCAGCACTATTGAAAACCCTGAAAATGAGGGGTGCGGGAAAATTGAAGAAGGGGTCATCAAAGCCAGATGCGAGCAACGATTATGAGTTGGGTAATCTACAAAAAGAGAGCACACATGATAGAAATGGTTCTACCAACATAGAGAATGGTGTAACCTCTGGAACGACAGCACTAAAATATAGAAACAGTGGGCTTCAAAATGTTGCAGTGCAGAAATTTGACTCAGGTAGTAGTGCATGGAATGCATGGAATGAAAGGGTTGAAGCGGTAAGGTCGTTGAGGTTTTCCTTGGAAGGGAATATAGTCGAAAGCTATTCTTTTCAGCAGTCAGAGAATGTTCATGGGTACAGCACTGAGAATGTTGCTTCACGAGATTTTCTTCGAACCGAGGGGGATCCAAGTGCTGCAGGTTACACAATTAAAGAAGCTGTGGCACTGACGAGGAGTGTGATACCAGGTCAACGTGTCCTTGGGTTGCATGTCATTTCAAATGTGCTTGACAAGGCATCGCTTAACACACACTTGAAACAAGTTGGGTCCACAATGGTTAAAGATGGTAGCTCTGTTGATTACAATGCAATTTGGGCTTATATTCTTGGCCCTGAACCAGAGCTTGCTTTGTCACTGAGGATGTGCCTGGATGATAATCATAACTCTGTCATTCTAGCTTGTGCTGAAGTTATTCAGTGTGTATTGAGCTGTAATTTGAACGAGACCTTCTTTGATACCCTAGAGAAAACATCAACTTATGAGAAGGATCTCTGCACTGCTGCCGTATTCCGAAGTAAACCAGAGATCAATGCTGGTTTCCTCCATGGTGGATTTTGGAAGTATAGTGCTAAACCTTCTAATATTCTTCCTTTTAGTGAAGATGTTGAGAATGTTGAAGATGGAGAGAAATATACCATCCAGGATGATATTGTGGTTGCACAACAAGATATTGCAGCAGGTCTGGTTCGAATGGGACTTCTTCCTAGGCTCCGCTATCTTCTAGAGGCAGGTCCTTCAGTAGCTTTGGAAGATTGCTTACTTTCAATACTTGTTGCAATAGCAAGGCATTCCCCAGCATGTGCACGGGCAATCATGATATGTGAAAGGCTCGTTGAGTTGATTATTCACAGATTTACAATGAGCGACAAAATTGATATTCTTTCCTTGAAAATAAAGTCTGTTGTCCTCTTGAAGGTTTTATCTCGTTCAGACAGGAAGAACTGTATTGCGTTTGTGAAAAGTGGAGCTTTTCAAACCATGATATGGCATTTGTATCACTATACTTCCTCCATCGACCATTGGGTCAAGTCAGGGAAGGAAAAATGTAAACTTTCTTCAACTTTGATGGTTGAACAATTAAGGTTGTGGAAGGTTTGCATTCAGTATGGATATTGTGTGTCTTACTTTTCTGATGTTTTCCCTGCGTTGTGCTTATGGTTGAGTCCACCAAATTTTGACAAACTTATTGAGAATAATGTTCTTCGTGAATTTACAACCATTTCTATGGAGGTCTACCATGTTTTGGAGGCTTTGGCTAGAAGACTTCCTAATTTTTTCTCACAGAAACATTTAGACAGTCAAGAGCCAGGACATGCTGGTAATGAATCAGAAGTTTGGTCCTGGAGTTGTGTTGTTCCAATTGTTGATTTAGCTACAAAATGGTTAGAGTCTAAGAGTGATCCATTCATATCCAAATTCTTTGAGTCACAAAAAGGGACTATGAATGGCTTTGGGTTTGAAGGTATATCTCTGGCGCCATTGTTGTGGGTTTATTCAGCTGTCATGAAGATGTTGTCTCAAGTAGTTGAAAGGATCATCCCGCATGATATTATGTCGCAGGAAGGAAGTGGTCAGATTGTGCCTTGGATACCAGAGTTTATACCACGAATTGGACTTGAGATAATTAAGCATGGCTTTCTAAGCTTTGCAGATGCATCTGATATGAAACCTGAAACCTATCCCTCTGGACGTAACTCTTTTGTTGAGAATCTTTGTTTTTTGAGAGAACATGGAGAATTTGAAACGTCCCTGGCTTCTGTATGTTGCCTTCATGGGTTGATGCTGAGTATTTTGCATATTGATAGACTGATCCATTTAGCCAAGACTGAGAGCCCGGATTATTCTCCCAAAGATTATAATTTCTCAAGGGAAGGGGAAATTTTAAGGGTTGGGATGTTCAAGGCATCCCTCATTGAACAGAAAAGTGTGCTTGACCTTTTTACTAAGGTGATTTCGTTGGAATGTGACTCTCTGCAGTTAATAGAGACCTTTGGCAGAGGGGGCCCTGCACCTGGAGTAGGAACTGGTTGGGGCGTGTCTGGTGGTGGATATTGGTCCCCTGGTGTTTTATTAGCACAAAACGATGCAGCATTTCTCATGTCACTTATTGAAGCATTTCAGGCCATTCCAACTTTAAATATACTGATTGCTCAGGAATCCTTGACCGTGCAAAGCATAAATTCTGCCTTGGCTGTATGCTTGGTTCTCGGGCCAGGAAATACAGGTTTGGTCGAGCAAACTGTAAATTTTTTGACTCAGGCTCCTATTTTGCATAATTTCAATCTTTATATTCAGAATTTTCTCCAACTCAATGGAGAAGTGAAGCAATTTGGCTGGGAGTACAGTGAAGATGACTGCTTGATCTTTTGTAAAACATTAAGTTCTCACTATAAGGATAAATGGTTAACTCCAAAGGAATCCAAATCCATGAAGAATAAGAGCAACTTTAGTGACAGAACATTTATGAATGGCAATGTTTCTTTGGATACAATATACGAGGGGTCAGATGAGACAAATGGGATGGCCGAAGACTGTACTTGTTTGATAGAACAGTGGGCTTACCAAAGACTTCCACTTCCTGGCCATTGGTTTTTCAGTCCAGTCTCAACTATCTGTGATAGTAAACATGCTGGTCTTCAAAAATCTGATGCACAAATTCTTATGCAGGACTCTGGTGATTTCCTTGAGGTTGCTAAGAGTGGACTCTTCTTTATTTTAGGTGTTGAAGCATTTTCCACCTTTCTACCTGATGGTTTCCCTTCACCTGTCCTAAGCGTGCCATTGATTTGGAAATTGCATTCCTTATCTGTTCTTTTACTCACTGGTATGGGAGTTCTGGATGATGAGAAGAGTAGGGATGTTTATGAGGTTTTGCAAGACCTCTACGGTCAGCGTCTTAATGAAGCTAGGTCTTGTCGACTTTCTGTACACGTCACGCAGAAGGATGCAAAACACTTGCTATCACAACCAGAAAATAAAAGCAATTTAGAGTTCCTAATGTTTCAATCCGAGATCCATGATAGTTACTCAACATTTATTGAAACTCTAGTGGAGCAGTTCTCTGCTGTATCCTATGGTGATGTACTGTATGGACGGCAAATTGTACTATATCTTCACCAATGCGTTGAATCTCCAACACGTCTTGCCGCCTGGAATGCACTAAATGGTGCTCGTGTTTTTGATCTTCTTCCACCTCTTGAGAAGTGCATCGCTGATCCTGAAGGGTATCTACAACCGATTGAGGATAATGAAGCCATTTTGGAAGCTTATTTGAAATCATGGGTTTCAGGTGCCCTTGACAAATCTGCAAGTCGAGGTTCAGTGGCCTATTTACTAGTTCTACACCACCTATCATCCTACATATTCCACTCTTACCCTGTCGACAATTTGTTGCTTCGGAACAAGCTCTCAAGGTCTCTTTTGCGAGACTACTCCCAAAAGCATCAGCACAAGGCAATGATGTTGGATCTCGTCTTATATACCGAGCCATCGACATATCTTGTAACTGGACAAAAGGGTATTGGTACGTCAATCGAAGCGAGCGTAGTAGAGAAAAGGCTGGAGGTGTTGAAGGAAGCATGTGAAAGGAACTCCTCTCTTTTGACTGTAGTTAAGGAGCTGGGTTGTGCTGCAAAAGACAAACTGTGA 4887 42.23 MEKKTQSSRRSQPKSSARATVFGTNALQLSEHDASRLVGGIVEKGISDAEQSKPFASVAPPRPSVLPFPVARHRSHGPHWESVTSKMGGDNIRDDRRGDEEEDERLMEIDSIANFANPIQRKKKSSLDFGRWREAVPGHNHDAASGEENKVASLAKTKNLIRAGEANNTRDNMSCEPLSAGVLAPSLMNIENSSSDFVNNPTGNKTNAAGLEFARSMNNVELKGLDKQHIPENLQDDYDQWGRISESEVKEGVPLDGTSLQDMATRLHHLNSEMVPCFESNIKGEDAFSTLESQIDAENCARIQRMSQEEIAEAQAEIMEKMSPALLKTLKMRGAGKLKKGSSKPDASNDYELGNLQKESTHDRNGSTNIENGVTSGTTALKYRNSGLQNVAVQKFDSGSSAWNAWNERVEAVRSLRFSLEGNIVESYSFQQSENVHGYSTENVASRDFLRTEGDPSAAGYTIKEAVALTRSVIPGQRVLGLHVISNVLDKASLNTHLKQVGSTMVKDGSSVDYNAIWAYILGPEPELALSLRMCLDDNHNSVILACAEVIQCVLSCNLNETFFDTLEKTSTYEKDLCTAAVFRSKPEINAGFLHGGFWKYSAKPSNILPFSEDVENVEDGEKYTIQDDIVVAQQDIAAGLVRMGLLPRLRYLLEAGPSVALEDCLLSILVAIARHSPACARAIMICERLVELIIHRFTMSDKIDILSLKIKSVVLLKVLSRSDRKNCIAFVKSGAFQTMIWHLYHYTSSIDHWVKSGKEKCKLSSTLMVEQLRLWKVCIQYGYCVSYFSDVFPALCLWLSPPNFDKLIENNVLREFTTISMEVYHVLEALARRLPNFFSQKHLDSQEPGHAGNESEVWSWSCVVPIVDLATKWLESKSDPFISKFFESQKGTMNGFGFEGISLAPLLWVYSAVMKMLSQVVERIIPHDIMSQEGSGQIVPWIPEFIPRIGLEIIKHGFLSFADASDMKPETYPSGRNSFVENLCFLREHGEFETSLASVCCLHGLMLSILHIDRLIHLAKTESPDYSPKDYNFSREGEILRVGMFKASLIEQKSVLDLFTKVISLECDSLQLIETFGRGGPAPGVGTGWGVSGGGYWSPGVLLAQNDAAFLMSLIEAFQAIPTLNILIAQESLTVQSINSALAVCLVLGPGNTGLVEQTVNFLTQAPILHNFNLYIQNFLQLNGEVKQFGWEYSEDDCLIFCKTLSSHYKDKWLTPKESKSMKNKSNFSDRTFMNGNVSLDTIYEGSDETNGMAEDCTCLIEQWAYQRLPLPGHWFFSPVSTICDSKHAGLQKSDAQILMQDSGDFLEVAKSGLFFILGVEAFSTFLPDGFPSPVLSVPLIWKLHSLSVLLLTGMGVLDDEKSRDVYEVLQDLYGQRLNEARSCRLSVHVTQKDAKHLLSQPENKSNLEFLMFQSEIHDSYSTFIETLVEQFSAVSYGDVLYGRQIVLYLHQCVESPTRLAAWNALNGARVFDLLPPLEKCIADPEGYLQPIEDNEAILEAYLKSWVSGALDKSASRGSVAYLLVLHHLSSYIFHSYPVDNLLLRNKLSRSLLRDYSQKHQHKAMMLDLVLYTEPSTYLVTGQKGIGTSIEASVVEKRLEVLKEACERNSSLLTVVKELGCAAKDKL 1628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3399023 3407499 + CmaCh20G007310.1 Cma20g00731 316545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00731 1628 MobiDBLite consensus disorder prediction 1 24 - -
Cma20g00731 1628 MobiDBLite consensus disorder prediction 348 373 - -
Cma20g00731 1628 SUPERFAMILY ARM repeat 636 747 IPR016024 -
Cma20g00731 1628 Pfam RPAP1-like, C-terminal 415 492 IPR013929 -
Cma20g00731 1628 PANTHER TRANSCRIPTIONAL ELONGATION REGULATOR MINIYO 1 1620 - -
Cma20g00731 1628 Pfam RPAP1-like, N-terminal 294 335 IPR013930 -
Cma20g00731 1628 MobiDBLite consensus disorder prediction 337 373 - -
Cma20g00731 1628 MobiDBLite consensus disorder prediction 73 101 - -
Cma20g00731 1628 MobiDBLite consensus disorder prediction 10 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00731 K20826 RPAP1; RNA polymerase II-associated protein 1 - csv:101210512 2546.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g227 . . . . . . . . . . . Cma20g00731 . Car20g00631 . . . . . . . . . . . . . . . . . Cone12ag1255 Cone8ag1310 . . . . . . . . . . . . . . . . Cmo20g00728 . . . . Cpe16g00336 . . . . . . . . Cla02g01083 Cam02g1161 Cec02g1159 Cco02g1207 Clacu02g1152 Cmu02g1114 Cre02g1418 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009191 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00731 Cma_Chr20 FPKM 7.311678 8.064849 8.180261 8.271332 8.033209 9.366133 9.499478 10.312268 9.262728 10.326117