Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00732 ATGGATTTCTCTCTTAAGGCATTCAAATCACACGGCTCTTACAAGTATGTGAGGAAGCTTTCTGGAACAGACACTACTCAAGATCAAGAACAGCTTCCGATTCTTTCAGATCAGGAGCCGAACAATCTTCACCAGAAACAGTCGTTTATGGCGGTGTCCGATGCATCTGACCGGAAGGAGGTCATTGTCAAGGTCGATCAGGCCGATGTTTCGAGTAATGCATCTGCGAGACCTGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGGTCGTAGACGGAATAATGGTGAAGGTAGTGATGGCGATGGTGGTAAGGGTGAGGATTTTGAGTTTAGGCAACAGAGGAAGGATGTGGAAGATCCGCCATCCAAGCTTATTGGACAGTTTCTGCACAAGCAGAAGGCGTCGGGAGAGATGTGTTTGGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCCTCCGGTGGTGGAATCTCCGCTGCGACGGAGTTCGAAAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCCGAAAGCGATTCGCTGCGAAGACGACATAGAGACTCGCCGGTCGATGAAGAACATAGAGTACAGCAACCGCCGCAGCGTGACCATCGAGCGCATGGCAATGGTCATGATGATGGTACTCCTGAGGTTGTGAGATGCACATCTAATTCGTCGTTTGAGCGAGGTGTATCGTTCCAGCGGAAATCTAGCTTGCTTAAGACTAAAACTAAGTCCAGATTGCTGGACCCGCCCGAACACCAGGATCGGAGGTCAGGGCGTGTACCGAAATCAGGGAAAATCCGCTCTGGTTTATTGTCAAAAGCCTTGGATGAGGAAGATGATGATCCATTCTTGGAAGAGGATCTTCCTGATGAGTATAAGAAGGCTAATCTCGGTGTTCTGACTATGTTACAATGGGCGAGTTTGATTTTGATAATCGCGGCATTGATTTGCACTCTAACAATCCGTTACTGGAGGAGAAAGAAGCTATGGAAGCTCGAATTATGGAAATGGGAGGTTATGATTCTAGTTCTGATATGTGGAAGGCTGTTTTCTGGTTGGGGTATTAGGATAATCGTGTTCCTCATCGAGAGAAGCTTTCTACTGCGTAAGAGGGTTCTATACTTCGTTTATGGAGTCAGAAAGGCAGTCCAGAATTGTCTTTGGTTGGGTCTGGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTAAAGAGCGATGCTCTTGAGTATGTGACCAAAGTCCTGATATGTCTGCTGGTAAGCACTTTGGTTTGGCTGGTGAAAACGCTGATAGTGAAGGTTCTGGCGTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAGGATGCATTGTATAACCAATATGTGATCGAGACACTGTCCGGGCCGCCATTGATAGAGATTCAAAAGAACAAGGAAGAAGAAGTGAAGCTTGCAGAAGAGGTTATTAAGTTACAGAATGCAGGGGCCACTATTCCTCCTGATCTAAGGGCATCTGCCTTTTCAAGTCCAGAGGGTGGAAGGGTAATAGGGAGTGGAGGGCTACAGAAAAGTCCCCGTGGAAGGAGTGCCAAGCTATCTCGGGCGCTATCCAAGAAAGGGGATGAGGGTATAACTATTGATCACTTGCATAGGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATTGTCCGACATGGGGCGCTTTCAACTTTGGATGAACAGATTAAGGATTCAGCTCATGAGGACGAATCAACTACCCAGATCAAGAGTGAGTATGAGGCAAAAGTTGCTGCCAAGAAGATTTTTCAGAACGTGGCTTCGCAGGGTTCCAAATATATCTATCTAGAGGACTTGATGCGTTTCATGGTAGAAGATGAAGCTTCAAAAACCATGAGTCTATTTGAAGGAGCATCTGAGAGTAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACACTGAACGACACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTTATTATTCTGGTAATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTTTTTGTAACCTCTCAGCTTGTACTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGAGACCGATGCGAAATCGATGGCGTGCAGATGATTGTTGAAGAAATGAACATTTTGACGACAGTTTTTCTACGATTCGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCAACTAAGGCCATCCACAACTACTACCGCAGTCCTGACATGGGCGATGCTGTAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATTGCTATCATGAGACAGAGAATACTAAGTTATATTGAGGACAAGAAGGAGCACTGGTGTCCTGCGCCATTGATTATCCTAAAGGATGTAGAAGAATTGAATAGAATGAGAATAGCAATATGGCTTACTCACAGAATGAACCATCAAGACATGGGAGAGAGGTGGACTAGGAGAGCCTTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGACCTGCAATATCGTCTCCTACCGCTCAATATCAACGTCTGTTCCTTGCCTCCAGTGAACTCTACTAGGCTTCCAGCTACTTGGGGAGCCACTGCAAGTTGA 2817 44.8 MDFSLKAFKSHGSYKYVRKLSGTDTTQDQEQLPILSDQEPNNLHQKQSFMAVSDASDRKEVIVKVDQADVSSNASARPVESVNSSGRIWRESSYDFWNDSGRRRNNGEGSDGDGGKGEDFEFRQQRKDVEDPPSKLIGQFLHKQKASGEMCLDMDMEMLELPQDKTLPPVVESPLRRSSKELKVSFESISEISESDSLRRRHRDSPVDEEHRVQQPPQRDHRAHGNGHDDGTPEVVRCTSNSSFERGVSFQRKSSLLKTKTKSRLLDPPEHQDRRSGRVPKSGKIRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTMLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLFSGWGIRIIVFLIERSFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSDALEYVTKVLICLLVSTLVWLVKTLIVKVLASSFHVSTYFDRIQDALYNQYVIETLSGPPLIEIQKNKEEEVKLAEEVIKLQNAGATIPPDLRASAFSSPEGGRVIGSGGLQKSPRGRSAKLSRALSKKGDEGITIDHLHRLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSAHEDESTTQIKSEYEAKVAAKKIFQNVASQGSKYIYLEDLMRFMVEDEASKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRFDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPEKIAIMRQRILSYIEDKKEHWCPAPLIILKDVEELNRMRIAIWLTHRMNHQDMGERWTRRAFLVEELVKIFQELDLQYRLLPLNINVCSLPPVNSTRLPATWGATAS 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3410359 3414365 + CmaCh20G007320.1 Cma20g00732 316546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00732 938 Gene3D - 762 811 IPR023408 -
Cma20g00732 938 PIRSF Memb_At2g17000 44 938 IPR016688 -
Cma20g00732 938 MobiDBLite consensus disorder prediction 263 280 - -
Cma20g00732 938 MobiDBLite consensus disorder prediction 193 231 - -
Cma20g00732 938 MobiDBLite consensus disorder prediction 98 133 - -
Cma20g00732 938 MobiDBLite consensus disorder prediction 261 284 - -
Cma20g00732 938 SUPERFAMILY Sm-like ribonucleoproteins 752 811 IPR010920 -
Cma20g00732 938 Coils Coil 493 513 - -
Cma20g00732 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 179 936 - -
Cma20g00732 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 170 - -
Cma20g00732 938 Pfam Mechanosensitive ion channel 704 906 IPR006685 GO:0016020|GO:0055085
Cma20g00732 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 170 IPR016688 -
Cma20g00732 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 179 936 IPR016688 -
Cma20g00732 938 MobiDBLite consensus disorder prediction 98 139 - -
Cma20g00732 938 MobiDBLite consensus disorder prediction 163 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00069 Cma-Chr17:327028 Cma20g00732 Cma-Chr20:3410359 0 dispersed
Cma09g00081 Cma-Chr9:355518 Cma20g00732 Cma-Chr20:3410359 0 transposed
Cma11g01360 Cma-Chr11:9005791 Cma20g00732 Cma-Chr20:3410359 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00732 K22048 - csv:101210264 1499.95