Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00732 ATGGATTTCTCTCTTAAGGCATTCAAATCACACGGCTCTTACAAGTATGTGAGGAAGCTTTCTGGAACAGACACTACTCAAGATCAAGAACAGCTTCCGATTCTTTCAGATCAGGAGCCGAACAATCTTCACCAGAAACAGTCGTTTATGGCGGTGTCCGATGCATCTGACCGGAAGGAGGTCATTGTCAAGGTCGATCAGGCCGATGTTTCGAGTAATGCATCTGCGAGACCTGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGGTCGTAGACGGAATAATGGTGAAGGTAGTGATGGCGATGGTGGTAAGGGTGAGGATTTTGAGTTTAGGCAACAGAGGAAGGATGTGGAAGATCCGCCATCCAAGCTTATTGGACAGTTTCTGCACAAGCAGAAGGCGTCGGGAGAGATGTGTTTGGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCCTCCGGTGGTGGAATCTCCGCTGCGACGGAGTTCGAAAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCCGAAAGCGATTCGCTGCGAAGACGACATAGAGACTCGCCGGTCGATGAAGAACATAGAGTACAGCAACCGCCGCAGCGTGACCATCGAGCGCATGGCAATGGTCATGATGATGGTACTCCTGAGGTTGTGAGATGCACATCTAATTCGTCGTTTGAGCGAGGTGTATCGTTCCAGCGGAAATCTAGCTTGCTTAAGACTAAAACTAAGTCCAGATTGCTGGACCCGCCCGAACACCAGGATCGGAGGTCAGGGCGTGTACCGAAATCAGGGAAAATCCGCTCTGGTTTATTGTCAAAAGCCTTGGATGAGGAAGATGATGATCCATTCTTGGAAGAGGATCTTCCTGATGAGTATAAGAAGGCTAATCTCGGTGTTCTGACTATGTTACAATGGGCGAGTTTGATTTTGATAATCGCGGCATTGATTTGCACTCTAACAATCCGTTACTGGAGGAGAAAGAAGCTATGGAAGCTCGAATTATGGAAATGGGAGGTTATGATTCTAGTTCTGATATGTGGAAGGCTGTTTTCTGGTTGGGGTATTAGGATAATCGTGTTCCTCATCGAGAGAAGCTTTCTACTGCGTAAGAGGGTTCTATACTTCGTTTATGGAGTCAGAAAGGCAGTCCAGAATTGTCTTTGGTTGGGTCTGGTTTTAATTGCTTGGAACTTTCTGTTTGATGACAAAGTTCAAAGAGAAGTAAAGAGCGATGCTCTTGAGTATGTGACCAAAGTCCTGATATGTCTGCTGGTAAGCACTTTGGTTTGGCTGGTGAAAACGCTGATAGTGAAGGTTCTGGCGTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAGGATGCATTGTATAACCAATATGTGATCGAGACACTGTCCGGGCCGCCATTGATAGAGATTCAAAAGAACAAGGAAGAAGAAGTGAAGCTTGCAGAAGAGGTTATTAAGTTACAGAATGCAGGGGCCACTATTCCTCCTGATCTAAGGGCATCTGCCTTTTCAAGTCCAGAGGGTGGAAGGGTAATAGGGAGTGGAGGGCTACAGAAAAGTCCCCGTGGAAGGAGTGCCAAGCTATCTCGGGCGCTATCCAAGAAAGGGGATGAGGGTATAACTATTGATCACTTGCATAGGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATTGTCCGACATGGGGCGCTTTCAACTTTGGATGAACAGATTAAGGATTCAGCTCATGAGGACGAATCAACTACCCAGATCAAGAGTGAGTATGAGGCAAAAGTTGCTGCCAAGAAGATTTTTCAGAACGTGGCTTCGCAGGGTTCCAAATATATCTATCTAGAGGACTTGATGCGTTTCATGGTAGAAGATGAAGCTTCAAAAACCATGAGTCTATTTGAAGGAGCATCTGAGAGTAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACACTGAACGACACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTTATTATTCTGGTAATTTGGCTACTGATTCTGGGTATAGCCACCAGCAAGTTTCTCCTTTTTGTAACCTCTCAGCTTGTACTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGAGACCGATGCGAAATCGATGGCGTGCAGATGATTGTTGAAGAAATGAACATTTTGACGACAGTTTTTCTACGATTCGACAACCAGAAGATCATATTTCCGAACAGTGTTCTCGCAACTAAGGCCATCCACAACTACTACCGCAGTCCTGACATGGGCGATGCTGTAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATTGCTATCATGAGACAGAGAATACTAAGTTATATTGAGGACAAGAAGGAGCACTGGTGTCCTGCGCCATTGATTATCCTAAAGGATGTAGAAGAATTGAATAGAATGAGAATAGCAATATGGCTTACTCACAGAATGAACCATCAAGACATGGGAGAGAGGTGGACTAGGAGAGCCTTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGACCTGCAATATCGTCTCCTACCGCTCAATATCAACGTCTGTTCCTTGCCTCCAGTGAACTCTACTAGGCTTCCAGCTACTTGGGGAGCCACTGCAAGTTGA 2817 44.8 MDFSLKAFKSHGSYKYVRKLSGTDTTQDQEQLPILSDQEPNNLHQKQSFMAVSDASDRKEVIVKVDQADVSSNASARPVESVNSSGRIWRESSYDFWNDSGRRRNNGEGSDGDGGKGEDFEFRQQRKDVEDPPSKLIGQFLHKQKASGEMCLDMDMEMLELPQDKTLPPVVESPLRRSSKELKVSFESISEISESDSLRRRHRDSPVDEEHRVQQPPQRDHRAHGNGHDDGTPEVVRCTSNSSFERGVSFQRKSSLLKTKTKSRLLDPPEHQDRRSGRVPKSGKIRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTMLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLFSGWGIRIIVFLIERSFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSDALEYVTKVLICLLVSTLVWLVKTLIVKVLASSFHVSTYFDRIQDALYNQYVIETLSGPPLIEIQKNKEEEVKLAEEVIKLQNAGATIPPDLRASAFSSPEGGRVIGSGGLQKSPRGRSAKLSRALSKKGDEGITIDHLHRLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSAHEDESTTQIKSEYEAKVAAKKIFQNVASQGSKYIYLEDLMRFMVEDEASKTMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRFDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPEKIAIMRQRILSYIEDKKEHWCPAPLIILKDVEELNRMRIAIWLTHRMNHQDMGERWTRRAFLVEELVKIFQELDLQYRLLPLNINVCSLPPVNSTRLPATWGATAS 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3410359 3414365 + CmaCh20G007320.1 Cma20g00732 316546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00732 938 Gene3D - 762 811 IPR023408 -
Cma20g00732 938 PIRSF Memb_At2g17000 44 938 IPR016688 -
Cma20g00732 938 MobiDBLite consensus disorder prediction 263 280 - -
Cma20g00732 938 MobiDBLite consensus disorder prediction 193 231 - -
Cma20g00732 938 MobiDBLite consensus disorder prediction 98 133 - -
Cma20g00732 938 MobiDBLite consensus disorder prediction 261 284 - -
Cma20g00732 938 SUPERFAMILY Sm-like ribonucleoproteins 752 811 IPR010920 -
Cma20g00732 938 Coils Coil 493 513 - -
Cma20g00732 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 179 936 - -
Cma20g00732 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 170 - -
Cma20g00732 938 Pfam Mechanosensitive ion channel 704 906 IPR006685 GO:0016020|GO:0055085
Cma20g00732 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 170 IPR016688 -
Cma20g00732 938 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 179 936 IPR016688 -
Cma20g00732 938 MobiDBLite consensus disorder prediction 98 139 - -
Cma20g00732 938 MobiDBLite consensus disorder prediction 163 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00732 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1499.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00069 Cma-Chr17:327028 Cma20g00732 Cma-Chr20:3410359 0 dispersed
Cma09g00081 Cma-Chr9:355518 Cma20g00732 Cma-Chr20:3410359 0 transposed
Cma11g01360 Cma-Chr11:9005791 Cma20g00732 Cma-Chr20:3410359 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00875 . 144 504 Mechanosensitive Ion Channel Family AT4G00290 64.8 9.3e-139 491.1
Cma16g00747 . 64 727 Mechanosensitive Ion Channel Family AT5G10490 58.6 2.3e-196 682.9
Cma05g00546 . 10 704 Mechanosensitive Ion Channel Family AT5G10490 55.5 8.3e-191 664.5
Cma12g00199 . 61 686 Mechanosensitive Ion Channel Family AT5G10490 57.4 1.2e-189 660.6
Cma05g00546 . 10 684 Mechanosensitive Ion Channel Family AT1G58200 57.4 1.8e-201 699.9
Cma12g00199 . 10 502 Mechanosensitive Ion Channel Family AT1G58200 67.6 6.4e-191 664.8
Cma16g00747 . 6 710 Mechanosensitive Ion Channel Family AT1G58200 50.4 7.6e-176 614.8
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G53470 55.6 1.3e-263 906.7
Cma20g00732 . 50 933 Mechanosensitive Ion Channel Family AT3G14810 53.1 1.6e-247 853.2
Cma20g00732 . 50 938 Mechanosensitive Ion Channel Family AT1G78610 58.8 2.6e-282 968.8
Cma11g01360 . 65 932 Mechanosensitive Ion Channel Family AT1G78610 52.0 5.9e-234 808.1
Cma20g00732 . 229 933 Mechanosensitive Ion Channel Family AT2G17000 59.7 8.4e-233 804.3
Cma11g01360 . 270 926 Mechanosensitive Ion Channel Family AT2G17000 56.6 5.9e-202 701.8
Cma10g00752 CST 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.4 2.8e-200 696.0
Cma01g01705 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 50.2 2.3e-165 580.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00732 Cma_Chr20 FPKM 6.530165 6.590094 14.035071 15.764135 4.101236 3.6542 3.926891 6.895264 6.210708 6.190868