Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00733 ATGGAGAAGATGATGAGTTTAAACCATCTGTTCGTGACGACATTCATCGGAAGCTTGTCGATGTTCATGGTGATTCCGAGCATTGTTGACATAACAATGGAGTTTGTGTGTCCTCACCAGGATCACTGTTCCATCGCCATTTATCTCTCTGGTCTCCAGCAGGCGATTGTAGGGCTTGGAGCACTGGTGATAACACCAGTAATTGGGAATCTATCAGACAGATATGGAAGGAAAACAATGCTGACTATCCCATTGACGTTTTCAATCATACCGCTCGCCATAATGGGTTATAGAAGAACTACCAACTTCTTCTATGCATTTTACATCATGAAAACTCTCACAGACATGGTTTCAGAAGGCACTACAGTTTCACTTGCTCTTGCTTATGTGGCAGACAAAACTTCAGAGGATCAGAGGATCTCGGCGTTCGGAATCCTATCTGGGGTCAGATCTGTAGGTTATGTGTGTGGAACCTTTTCGGCTCGGCTCCTTTCAACTGCTACAGTGTTTCAGGTGGCTGCTTTCATGTCAGTGCTTGCAGTAGTGCACATGAGGATTTTTCTCAAGGAAAGTATTCCAGATCAGAATGAGTTGACTCAACCGATCCTCGACGAAAACTTAAGTGGTGGTGATGATGAAAATGGACCAGAATTGCCTACAATAACTCAGTTATCGATAGGGATGTCTTCTATAAGAGACGTTATCTCCTTAATCACGAGTAGCACAACATTTTCACAAGCAGCAAGAGTTTCCTTCTTCAATAGTCTAGCAGAGAAGGGGATGCAAGCATCACTAGCGTATTTCTTAAAGGCCCGTTTTCACTTCGACAAAAACCAGTTTGCTGACTTGATGATAATTGACGGGATTGCCGGGGCCATTTCACTGTTTCTTTTGATGCCCGCTTTGGCACTAGCTATAAGACAGGAGAGGTTGCTATCAATAGGGCTGTGGGCGAGCATTATAAATATACTACTTAACAGCATAGCTTGGTCAGTTTGGGTTCCTTATGCTTTAAGAGCATTGACAATTTTTACAATTCTGGTCAGTCCAATAGTAAGTTTTCCTTGCTTTCTTCAAAGCTTGTCTTTGCTCATGAAAAAGTGCCGTGGCATTCACACGAATCTATGGCTTGAACAGATATTCAACATTGCATCGAGTCAAGTTGGACCGAGTGAGCAGGGGAAGGCCCAAGGATGCATCTCAGGCATTAATTCCCTTGCCAACATTGTTTCTCCATTACTTTTCAGCCCCTTGATAGCTCTTTTCCTCTCCAAGGATGCACCATTTGACTTCCCCGGCTTCGGTATTTTGTGCATTGGGCTCGCTTCGATTGTTCTCATGTGTTCTGTTCCCTTAACAACATCTTTCTATTTTGCAGTTGATTGGCTTCGCTCTAAGCCTGATGATCCGGGTAGACCCGTTCATTTGCATTCAGAAAATCAAAAACTTAGTGTAGAGCTTGTTCATAACAGCCAGACAGAGGGATTTAGTAAATCCCTAAGTAAAATCCTTACTGGTAGATACTGTGAATTTGAAGCAACACAGAGACAACAGATACTCAAACTCAAAGCAACTACAGCAGAAAGTGCGTCAGCAGTCAAGATTGTTGTGCGTTCTTCACCATTGATGAATGCAATAAACAAAATGCTTCGAGATAATGCACAAATGAATGTTGTACAGGTCCCGATTGTGTCGAATCGAGACCATGTTTTCTTCTGCAAATCAGATATAAAAGCTCGAAACAGGGAGAGAAATACAGACCTTAGAATAGAACTTCATTGCCCAAGAATTTGGATGGGACATTGGAATGCGATTTACTTTTGGCGCCTAATGGAGCTCCGCTTATGCCCGCCGCCGTACGTGATTGGGGATAGCGTTCGACTCTTCTCAAAGGCACCTAAACGCTACGACGGCTTCTGCAGTTACCATTTCCGGCCAAATCTGCAGGTCAAATGTGCTACACTCACCAAACAAAGTCACCGATTCCTCTCTACTTTGGCCACAACCGCCGCCGCCGGCGACCATTCAGCTACCAATCGGTTGATTCGAAAGTTTGTTGCGAGTTCTCCGAAATCTATTACTCTCAATGTCCTCTCCGATATCCTTTCCTCTCGCACGGCTCAACCTGGACTCTGCTCTGTTGCTCGCATCTTATATTCCAGAATTACTGAGACGTCCTGGTTCGCATGGAATTCCAAGCTAGTTGCTGACCTTGTTGCCTTCCTCGATAAAAATGGACAGATTGTTGACTCGGAAACCCTAATTTCCGAGGCAATTTCGAAATTAGGGATTCAAGAAAGAAAGCTTGTAAACTTCTACTGTCAGCTGGTTGAATCTCAATCCAAACACGGTTCAGAAAGAGGATTTCGTAACGCATATGCTTGTCTTCATGAGCTTCTTTATAATTCGTCCTCGATTTATGTGAAACGTCGAGCTTATGAATCAATGGTTACTGGTTTGTGCTCCATGAAAAGGCCTCAGGAAGCTGAGAGTTTGGTAAAAGAAATGAAAGCCAAAGGATTTGCTCCTGCTGCATTTGAATACAGGTCCATTATTTACGCATATGGAACATTGGGATTGTTTGAAGATATGAAGAGGAGTTTGGAAGAGATGAAGAACGATCATATTGCTTTAGACACAGTTTGCTCTAACATGGTGCTCTCATCGTATGGAGTTCATAATAAGCTTGCAGATATGGTTCTATGGCTTCAAATAATGAAAACTTCTGCTCTTCCTTTTTCGGTTCGGACGTACAATTCTGTCTTGAATTCATGTCCGAAGATTACGTCGATGCTACAAGACAAGAGCGGCGATCTTCCAGTTTTGATTGAAGACTTGATCTCGGTTCTGGATGGCGATGAGGCTTTGTTGGTTGAAGAGTTGGTTGGTTCATCTGTTTTGAGAGAAGTAATGGTGTGGGATGCAATGGAGATGAAGTTGGATTTGCATGGAGCACATGTTGGTGCAGCTTATGTGATCATTTTGGAGTGGATGAAGGAGATGAGACTGAAGTTTGAAAATGAGAGCTGTGTGATTCCAGCACAAGTTACAGTAATTTGTGGATCTGGAAACCATAGTATTGTTAGACGAGAGTCTCCTGTAAAAGCTCTGATTAGAGAGATTATGTTTCGGACACAAAGTCCGCTGAGAATTGATCGAAAGAACACTGGAAGATCCTCTTCCAAGAATGGATCATCATCTTCCTCATCCAAGGCTTTTGACAATAAACCAGAGCGGATTTTCCCTGATTTCGGTACACGCCCTGACCTCCGATCCTGGTGTTCGGGCGGGTCCAGCAATCTGGACTTAGTTTTAGTCTTAAGCAAGCTAGATTTCCGCTGGAACGATACACCTCGCTCAAACGACGAATTAGATACTCGAACGAGACCTTCAACTCTTTCGAACTCCGTCGCAGCGGAGATTCCACCACCGGAGGCAGAGTCTTATCCTGTGAAACTGTCCAATAAGCTTGGATGGCGGATCTTCCACATCCTTCCTCTGTTGCCTAAACTCAAAATCCTCACCCTTACCACCATCGCCATCACTACCTTCACCATTATTCCGTCTACGACCACTATCATTCCAGAAATCATAGCTCGACTCCCGCCAAATCCTCCCACTGGAGTTCACCGACTCCACAGGTCTCGCAGATGCATTACTCGAAACATCGGCCTGATCGACCTTGACAATGACCTCCTTCCGGAGAAGAGAGAGAAAGAAGAGAGAGAATTTGCTCTGCCTGCAACAGACTCGAATGTGGCGCCGGAAAAGAGACATACAGAGGCGACAGAATAA 3795 44.11 MEKMMSLNHLFVTTFIGSLSMFMVIPSIVDITMEFVCPHQDHCSIAIYLSGLQQAIVGLGALVITPVIGNLSDRYGRKTMLTIPLTFSIIPLAIMGYRRTTNFFYAFYIMKTLTDMVSEGTTVSLALAYVADKTSEDQRISAFGILSGVRSVGYVCGTFSARLLSTATVFQVAAFMSVLAVVHMRIFLKESIPDQNELTQPILDENLSGGDDENGPELPTITQLSIGMSSIRDVISLITSSTTFSQAARVSFFNSLAEKGMQASLAYFLKARFHFDKNQFADLMIIDGIAGAISLFLLMPALALAIRQERLLSIGLWASIINILLNSIAWSVWVPYALRALTIFTILVSPIVSFPCFLQSLSLLMKKCRGIHTNLWLEQIFNIASSQVGPSEQGKAQGCISGINSLANIVSPLLFSPLIALFLSKDAPFDFPGFGILCIGLASIVLMCSVPLTTSFYFAVDWLRSKPDDPGRPVHLHSENQKLSVELVHNSQTEGFSKSLSKILTGRYCEFEATQRQQILKLKATTAESASAVKIVVRSSPLMNAINKMLRDNAQMNVVQVPIVSNRDHVFFCKSDIKARNRERNTDLRIELHCPRIWMGHWNAIYFWRLMELRLCPPPYVIGDSVRLFSKAPKRYDGFCSYHFRPNLQVKCATLTKQSHRFLSTLATTAAAGDHSATNRLIRKFVASSPKSITLNVLSDILSSRTAQPGLCSVARILYSRITETSWFAWNSKLVADLVAFLDKNGQIVDSETLISEAISKLGIQERKLVNFYCQLVESQSKHGSERGFRNAYACLHELLYNSSSIYVKRRAYESMVTGLCSMKRPQEAESLVKEMKAKGFAPAAFEYRSIIYAYGTLGLFEDMKRSLEEMKNDHIALDTVCSNMVLSSYGVHNKLADMVLWLQIMKTSALPFSVRTYNSVLNSCPKITSMLQDKSGDLPVLIEDLISVLDGDEALLVEELVGSSVLREVMVWDAMEMKLDLHGAHVGAAYVIILEWMKEMRLKFENESCVIPAQVTVICGSGNHSIVRRESPVKALIREIMFRTQSPLRIDRKNTGRSSSKNGSSSSSSKAFDNKPERIFPDFGTRPDLRSWCSGGSSNLDLVLVLSKLDFRWNDTPRSNDELDTRTRPSTLSNSVAAEIPPPEAESYPVKLSNKLGWRIFHILPLLPKLKILTLTTIAITTFTIIPSTTTIIPEIIARLPPNPPTGVHRLHRSRRCITRNIGLIDLDNDLLPEKREKEEREFALPATDSNVAPEKRHTEATE 1264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3410373 3421746 - CmaCh20G007330.1 Cma20g00733 316547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00733 1264 TIGRFAM PPR: pentatricopeptide repeat domain 812 843 IPR002885 -
Cma20g00733 1264 MobiDBLite consensus disorder prediction 1052 1077 - -
Cma20g00733 1264 Gene3D MFS general substrate transporter like domains 5 451 IPR036259 -
Cma20g00733 1264 MobiDBLite consensus disorder prediction 1238 1264 - -
Cma20g00733 1264 MobiDBLite consensus disorder prediction 1052 1074 - -
Cma20g00733 1264 PANTHER ATPASE EXPRESSION PROTEIN 3 650 1059 - -
Cma20g00733 1264 Gene3D Tetratricopeptide repeat domain 705 937 IPR011990 GO:0005515
Cma20g00733 1264 CDD MFS_SLC46_TetA_like 10 448 - -
Cma20g00733 1264 SUPERFAMILY SMR domain-like 977 1057 IPR036063 -
Cma20g00733 1264 MobiDBLite consensus disorder prediction 1118 1137 - -
Cma20g00733 1264 Gene3D - 979 1060 IPR036063 -
Cma20g00733 1264 Pfam PPR repeat 812 841 IPR002885 -
Cma20g00733 1264 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 192 IPR020846 GO:0022857
Cma20g00733 1264 SUPERFAMILY MFS general substrate transporter 10 449 IPR036259 -
Cma20g00733 1264 PANTHER OS02G0120000 PROTEIN 650 1059 - -
Cma20g00733 1264 ProSiteProfiles Smr domain profile. 980 1060 IPR002625 -
Cma20g00733 1264 Pfam Major Facilitator Superfamily 10 412 IPR011701 GO:0022857|GO:0055085
Cma20g00733 1264 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 809 843 IPR002885 -
Cma20g00733 1264 SMART SMR_2 977 1074 IPR002625 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00733 - - - cpep:111776692 841.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00516 Cma-Chr15:2364867 Cma20g00733 Cma-Chr20:3410373 5.61E-67 dispersed
Cma20g00733 Cma-Chr20:3410373 Cma14g00541 Cma-Chr14:2683805 3.85E-09 dispersed
Cma19g00755 Cma-Chr19:7499544 Cma20g00733 Cma-Chr20:3410373 9.39E-153 wgd
Cma02g00276 Cma-Chr2:1267065 Cma20g00733 Cma-Chr20:3410373 9.84E-121 wgd
Cma20g00733 Cma-Chr20:3410373 Cma05g00327 Cma-Chr5:1416924 3.03E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g214 . Blo15g00393 Bda06g00469 . Bpe07g00705 . . Bma12g00911 . . . Cma20g00733 . Car20g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo20g00731 . . . . Cpe16g00334 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011207 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00733 Cma_Chr20 FPKM 1.313328 1.868098 1.545251 1.666087 4.675693 4.77608 5.066623 1.663142 1.613993 1.995584