Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00736 ATGGCGGCGAGTGCATCTTGGCATCCCCAGGAGAATGGGTTCAACGAGATCTGCGGCTTACTCGAGCAGCAGATTTCTCCTTCCTCAAATTCTGATAAGTCCCAGATTTGGCAGCAGCTTCAGCAATACTCCCAGTTCCCTGACTTCAATAACTACCTCGCTTTTATTCTTGCGCGCGCTGAGGGTAAATCAGTTGAGGTTCGACAAGCTGCTGGCTTGTATCTGAAAAACAACCTTAGAACTGCATACAAGTCGATGACTCCTGCGTTTCAGCAATATATTAAAGCTGAACTGTTGCCATGTATGGGAGCTGCGGACAGACATATCAGGTCTACGGTTGGGACGATCATCAGTGTCGTTGTTCAACTAGGCGGAATATTGGGGTGGCCTGAGTTGTTGGAAGCACTTGTAAGATGCTTAGACAGTAAAGACCAGAATCACATGGAAGGTGCCATGGATGCTTTGTCCAAGATTTGTGAAGATATACCTCAAGTGCTTGATTCAGATGTACCCGGATTGTCTGAACGCCCAATCAACATATTTCTTCCTAGATTATTTCAGTTTTTTCAGTCGCCACATGCTACATTGAGAAAACTTTCGTTGAGTTCTGTGAATCAATACATTATGCTGATGCCCACGGCGCTATATATATCCATGGACCAATATCTTCAAGGTTTATTTGTTCTTGCTAATGACCCTACCTCGGAAGTGCGAAAGCTGGTTTGTCAAGCATTTGTACAGCTAATTGAAGTACGCCCAACTTTCTTGGAGCCACACCTGCGGAATGTGATCGAATACATGTTGCAAGTCAATAAGGATGCTGACGAGGAAGTTTCACTTGAAGCCTGTGAATTTTGGTCTGCATATTGTGATGCTCAATTACCTCCAGAGAACTTAAGGGAGTTCTTGCCACGTTTAATTCCAGCATTATTGTCAAATATGGTGTATGCTGATGACGATGAAGCGCTTCTTGAGGCCGAGGAAGATGGATCTCTTCCAGACCGAGAGCAGGATCTAAAACCCCGTTTCCATTCGTCAAGATTACATGGATCAGACAATGGAGAAGATGATGACGATGACATCGTAAATATATGGAACTTGCGCAAATGCAGTGCTGCAGCTCTTGATATTCTCTCAAATGTGTTTGGGGATGAAATTCTTCCTATATTGATGCCTATTGTTCAGGCCCATTTGTCAACAAATAGTGATGAAGCCTGGAAAGAAAGGGAAGCTGCTGTATTGGCTCTTGGTGCCATAGCTGAAGGTTGCATTAGTGGACTTTATCCTCATCTGCCTGAGATTATCACATTTCTCATTCCTCTTCTAGACGATAAATTTCCTTTAATAAGGAGCATATCTTGTTGGACACTTTCTCGTTTCAGCAAGTTCATTGTTCAGGGCATTGGAACACAGCAAGGTTACGAACAATTTGATAAAGTTCTCATGGGACTTCTACGAAGATTATTGGACAATAACAAGAGGGTGCAAGAAGCTGCTTGTTCTGCTTTTGCAACGCTGGAGGAGGAAGCTGCAGAGGAGTTGGCGCCTCATTTGAAAAATATATTACAGCACCTAATATGTGCTTTTGGGAAGTATCAGAGACGGAATCTACGGATAGTGTATGATGCTATTGGAACCTTAGCAGATGCTGTTGGAGGGGAGCTGAATCAGCCTATTTATCTTGATATTCTCATGCCACCATTAATTGCCAAATGGCAGCAACTTTCGAACTCAGATAAAGATCTTTTTCCGCTTTTGGAGTGCTTCACGTCTATAGCACAGGCTTTGGGGACTGGATTTGCCCAATTTGCTCAGCCTGTGTATCAGAGATGCATAAGCATTATTCAGACCCAACAAATGGCAAAGGTCGATCCCGTTTCTGCCGGGGTTCAGTACGATAAAGAGTTCATTGTATGCTGTCTCGATCTTCTTTCAGGACTTGCGGAGGGTCTTGGCAGTGGGATAGAAAGTTTGGTTTCTCAAAGCAACCTGAGGGACTTGCTCCTGCAATGTTGCATGGATGAAGCTTCTGATGTCCGGCAGAGTGCCTTTGCATTGCTTGGGGATCTTGGAAGAGTATGCCATGTTCATTTGCAACCACGTTTGTCGGAATTTCTAACCGCTGCAGTGAAGCAATTGGATACTCCTAAGCTGAGGGACATTGTATCTGTGGCAAACAATGCCTGTTGGGCAATTGGAGAATTGGCTGTTAAGGTACACCAAGACATTTCTTCTGTCGTTATGACCGTGATTTCAAGCTTGGTCCCGATTCTTCAACACGCACAGGAGCTAAATAAATCTCTGGTAGAGAATAGTGCAATTACTCTTGGAAGGATTGCATGGGTTTGCCCTCAGCTAGTGTCACCACATATGGAACATTTCATGCAACCATGGTGCACTGCTTTATCCATGATACGTGATGACGTAGAAAAGGAGGATGCTTTCCGAGGTCTTTGCGCTCTGGCTAAATCAAATCCATCAGGAGCTCTAAGTTCACTTGCTTTCATGTGCAAAGCCATTGCGAGTTGGCATGAAATAAGGAGTCAAGATCTTCATAATGAAGTATGCCAAGTTCTGCAAGGCTATAAACAGATGCTGAGAAATGGTGGGTGGGAGCAGTGTATTTCTTCTCTAGAACCATCTGTGAAGGAGAAACTATCAAAATATCAAGTATAG 2676 43.87 MAASASWHPQENGFNEICGLLEQQISPSSNSDKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEVRQAAGLYLKNNLRTAYKSMTPAFQQYIKAELLPCMGAADRHIRSTVGTIISVVVQLGGILGWPELLEALVRCLDSKDQNHMEGAMDALSKICEDIPQVLDSDVPGLSERPINIFLPRLFQFFQSPHATLRKLSLSSVNQYIMLMPTALYISMDQYLQGLFVLANDPTSEVRKLVCQAFVQLIEVRPTFLEPHLRNVIEYMLQVNKDADEEVSLEACEFWSAYCDAQLPPENLREFLPRLIPALLSNMVYADDDEALLEAEEDGSLPDREQDLKPRFHSSRLHGSDNGEDDDDDIVNIWNLRKCSAAALDILSNVFGDEILPILMPIVQAHLSTNSDEAWKEREAAVLALGAIAEGCISGLYPHLPEIITFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGIGTQQGYEQFDKVLMGLLRRLLDNNKRVQEAACSAFATLEEEAAEELAPHLKNILQHLICAFGKYQRRNLRIVYDAIGTLADAVGGELNQPIYLDILMPPLIAKWQQLSNSDKDLFPLLECFTSIAQALGTGFAQFAQPVYQRCISIIQTQQMAKVDPVSAGVQYDKEFIVCCLDLLSGLAEGLGSGIESLVSQSNLRDLLLQCCMDEASDVRQSAFALLGDLGRVCHVHLQPRLSEFLTAAVKQLDTPKLRDIVSVANNACWAIGELAVKVHQDISSVVMTVISSLVPILQHAQELNKSLVENSAITLGRIAWVCPQLVSPHMEHFMQPWCTALSMIRDDVEKEDAFRGLCALAKSNPSGALSSLAFMCKAIASWHEIRSQDLHNEVCQVLQGYKQMLRNGGWEQCISSLEPSVKEKLSKYQV 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3437365 3448557 - CmaCh20G007360.1 Cma20g00736 316550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00736 891 ProSiteProfiles Importin-beta N-terminal domain profile. 36 104 IPR001494 GO:0006886|GO:0031267
Cma20g00736 891 SUPERFAMILY ARM repeat 7 883 IPR016024 -
Cma20g00736 891 SMART IBN_N_2 36 104 IPR001494 GO:0006886|GO:0031267
Cma20g00736 891 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
Cma20g00736 891 Gene3D - 3 891 IPR011989 -
Cma20g00736 891 Pfam HEAT repeat 666 694 IPR000357 GO:0005515
Cma20g00736 891 Pfam HEAT-like repeat 406 459 - -
Cma20g00736 891 PANTHER TRANSPORTIN 1 ISOFORM 1 7 889 - -
Cma20g00736 891 PANTHER IMPORTIN BETA 7 889 IPR040122 GO:0006606
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00736 K18752 TNPO1, IPO2, KPNB2; transportin-1 - csv:101222100 1664.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00273 Cma20g00736 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01019 Cma-Chr15:6301255 Cma20g00736 Cma-Chr20:3437365 6.21E-22 dispersed
Cma15g01022 Cma-Chr15:6317514 Cma20g00736 Cma-Chr20:3437365 1.56E-23 dispersed
Cma20g00736 Cma-Chr20:3437365 Cma02g01129 Cma-Chr2:6688009 3.68E-23 dispersed
Cma02g00273 Cma-Chr2:1245631 Cma20g00736 Cma-Chr20:3437365 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g205 . Blo15g00387 Bda06g00473 Bda08g00980 Bpe07g00709 . . . . . Cma02g00273 Cma20g00736 . Car20g00638 . . . . . . . . . . . . . . . . . . . Cone3ag0971 Cone10ag1175 Lsi10g00510 . Chy11g00239 . . . . . . Bpe05g00300 . . . Cmo02g00270 Cmo20g00733 . . . . Cpe16g00330 Cpe05g01359 Bhi10g01809 . . . . . . Cla02g01185 Cam02g1263 Cec02g1274 Cco02g1311 Clacu02g1246 Cmu02g1212 Cre02g1527 . Csa02g01409 . Cme11g00361
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005972 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 0 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00736 Cma_Chr20 FPKM 11.051502 11.097716 15.367742 15.494089 11.69388 12.614188 11.107175 16.267065 15.188714 16.619394