Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00737 ATGCGAGCAGCGTTCAAGTCCGATAAATCTGGGGATAAGAACACTGGAATTTACAGCACCAGCCGGAAGTACGAACTCGATCGCACAAAGATGATCCTGATTGGGTCTCCGTTGGGAATGGGAACCATCTCCTGCAAACCCTTCTTCTCGGACAGATTGCGAAGTGGATTTTACAGCAGAGCTCGTTCTAGGCACCGTCTCTGTGTTAATGGAGGAGAAAATCGAAAAAAGAAAAAGGTCGTCGTCGTCGGCTCCGGCTGGGCTGGCCTTGCCGCTGCTAATCACCTCTGCAATCAGGGATTTGATATCACTGTTCTTGAACCCGGCAATGATTATGGTGGTGCCGATAATCATGGGATTCGTGGTTACTGGCGTCCCTACAAGAATATATTTGGTCTCGTTGATGAGCTTGGTATCACTCCTTTCACAAACTGGACAGCACCTGTTCATTATTCAGCTGATGGATTGGAGGTAAAATTTCCAATATTCCAAGATCTGCCTCAACTGCCAACTCCTCTCGGAACCTTATATTATACAGAATTTCTCCAACTCCCGTTGTTGGATCGCTTATCGTCACTTCCTTTGATGGCTGCAGTGGTTGACTTTGACAACACGGATACAGTGTGGAGAAAATACGACTCAATTACCGCCCGGGAGCTATTCAAGCAGTTCGGCTGTTCAGGAAGGCTCTATAGTAGCATACTCAATCCATTGCTTCAAGTAGGACTATTTGCTCCAGCCGAGCAATGCAGTGCTGCAGCAACCTTGGGAAACTTATACTATACTATCCTTGCTCACCAGAAAGATTTTAATCTAGTCTGGTGTCGAGGAACGGTTAAAGAGAGAATTTTCCAGCCATGGATTGACTTGCTGGAGAGCAAGGGATGTAAATTTGTTAGGAGGAGCAAAATCACAGATGTAATTGTAGATGATGATACAAATCGTCTCTCGGACGTTTTTTGTGGCGGAAAAAGATACGAGGCCGATGCAGTTGTTTTCGCTGTCGGAATTTCTATACTTCAAGAACTCGTTCGTAATTCGGCAGCATTACAAACAAAAGAGGAGTTCCTCAAGGTTTTGAACTTAAGAACAGTTGATATGCTGACTGTTAAGCTTTGGTTTGACAGAAAAGTTAATATTCCAAATTCGAGTAATTCTTGCTCGGCGTTGGATAATTCATTTGGGTGGAGTTTCTTCAACTTAAATGCCATTCAAGACGAACACAAAGATGAATCAGTTACAGTCTTGCAAGCTGACTTTTATCATGCCAACGAGCTGATGCTGCTGAACGAAGAAGTTATAGTCGAAAAGGTGAAATCTTACCTCTCAACGTGCGTTAAGGATTTCGAGAATGCCATCGTAGTGAAGAAGGAAATCGGAAAGTTTCCAGCAACATTGACTCACTTCTTTCCTGGTTCATACAAGTACCGGATGTACGGGTTCACATCGTTCACAAATGTATTCATGGCTGGAGACTGGATTGTAAACCGTCACGGTTCGTGGTCACAGGAGAAAGCATATGTGACTGGTCTTGAGGCTGCAAATAGAGTAGTGGATTTTGTTGAAGAAGGAAGCTTTGCGAAAATTGCACCAGTAGAGGAGGATGAGCCTCACGTGGAGGCTCTTCGTGGTCTCAACAGAAGGATTGGTGAGATTAGATCCCAACTCCCATTGGACAGTTTCTTCCTCTAA 1692 44.39 MRAAFKSDKSGDKNTGIYSTSRKYELDRTKMILIGSPLGMGTISCKPFFSDRLRSGFYSRARSRHRLCVNGGENRKKKKVVVVGSGWAGLAAANHLCNQGFDITVLEPGNDYGGADNHGIRGYWRPYKNIFGLVDELGITPFTNWTAPVHYSADGLEVKFPIFQDLPQLPTPLGTLYYTEFLQLPLLDRLSSLPLMAAVVDFDNTDTVWRKYDSITARELFKQFGCSGRLYSSILNPLLQVGLFAPAEQCSAAATLGNLYYTILAHQKDFNLVWCRGTVKERIFQPWIDLLESKGCKFVRRSKITDVIVDDDTNRLSDVFCGGKRYEADAVVFAVGISILQELVRNSAALQTKEEFLKVLNLRTVDMLTVKLWFDRKVNIPNSSNSCSALDNSFGWSFFNLNAIQDEHKDESVTVLQADFYHANELMLLNEEVIVEKVKSYLSTCVKDFENAIVVKKEIGKFPATLTHFFPGSYKYRMYGFTSFTNVFMAGDWIVNRHGSWSQEKAYVTGLEAANRVVDFVEEGSFAKIAPVEEDEPHVEALRGLNRRIGEIRSQLPLDSFFL 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3450444 3459859 - CmaCh20G007370.1 Cma20g00737 316551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00737 563 SUPERFAMILY FAD/NAD(P)-binding domain 75 520 IPR036188 -
Cma20g00737 563 PANTHER OS04G0560500 PROTEIN 57 539 - -
Cma20g00737 563 PANTHER PROTOPORPHYRINOGEN OXIDASE 57 539 - -
Cma20g00737 563 Pfam Flavin containing amine oxidoreductase 88 517 IPR002937 GO:0016491
Cma20g00737 563 Gene3D - 73 525 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00737 - - - bhj:120089282 950.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01006 Cma-Chr11:5443037 Cma20g00737 Cma-Chr20:3450444 5.89E-08 dispersed
Cma14g01430 Cma-Chr14:10974911 Cma20g00737 Cma-Chr20:3450444 1.47E-15 dispersed
Cma20g00737 Cma-Chr20:3450444 Cma12g00423 Cma-Chr12:2188465 1.78E-06 dispersed
Cma20g00737 Cma-Chr20:3450444 Cma06g01694 Cma-Chr6:10418708 1.10E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g190 . . . Bda08g00982 . . . . . . . Cma20g00737 . Car20g00639 . . . . . . . . . . . . . . . . . . . . . Lsi10g00509 . Chy11g00241 . . . . . . Bpe05g00298 . . . . Cmo20g00734 . . . . Cpe16g00329 . . . . . . . . Cla02g01184 Cam02g1261 Cec02g1272 Cco02g1310 Clacu02g1243 Cmu02g1210 Cre02g1525 . Csa02g01408 . Cme11g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011350 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 4 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00737 Cma_Chr20 FPKM 1.894009 2.532908 7.062824 7.256067 9.935668 10.062449 9.611527 6.55827 6.407309 6.589831