Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00739 AAACAGAGGATTCTAGGTGGAGAGGAGGATATTGCTTCCTTCAAGCACTTCCTTTCAAACGAAGAAGAAGAAGAAGAACCTGCTGCTGCTGCGGCTTTGGCCAACAGGGAAATGGGTTGTGTTGCCTCAAAGTTGGAGGAAGAAGAAGAAGTAGTCTCCATCTGTAGAGAAAGAAAACGCCACATAAAGTTAGCTGTTGAGAGAAGGTATGCACTTGCAGAGGCACATAGTAAATATTGTCAAGCTTTAAATGCTGTTTCAGCCGCCATTAAGTTCTTTGTAGCTCGCCATTCTTCTCCTTCCCCTTTCCTCATCACATTCCCTCCTCCATGTTCTTCTTCTTCTCCTCCCCCTTCAGAAAAAGTGATACCCAATCCAATGTTTCTTCAGCAAAGGCCTTCAGATTCCACCCATGAAGCCATACCCGCCTGCCCTTCATGTGCTTGTTGTTCTTCTTCAACCTCCACAGAGTCCTCCATGGAAGAAAGAGAAGAAGAACCAGTAGAGGAGGAGAGGATTGAACAGGTCCCTGCATATTTCTATATGCAAATGCCACCCCCAATGCCATCCCCTCAGAGGGAGTTTAGTTGGGATTTTTTCAATCCATTTGATACCATGAGGACCGATGTCGTCGCCGGGTATCGCCAGAGCTCGGAGGAGGAAGAAGGCATTCCAGAGCTGGAGGAAGAGACAGTAGAGAAAAACCAGAGGGTTGAGGATGTTGGAGAGAAGGAAGAAGAGAATCAGTTGAAGAAGGGGCTGAAAGTCATTGATACACCTGTGGAAGGAAGGGAACTTTTGGAAGCATTGCAGGATGTTGAGGATTATTTCATTAGGGCTTATGATTCTGGAATTGATGTTTCTAGGATGTTAGAGGCCAACAAAATTCAGCTTCAATCTGGTTTAGAAGAAATAAAAGAGAACTCGACAAAACTCATCCAAGCGATAACTTGGCACCGGTCTGTTTCGGGCAAGACTTCATCATGTAAGAGTCTAGTAGCATCTAGTTCGAAAGGTTCTTCGCCATGGACGGAGTTCAGTAATGAGCTGTTTGATGATTATGACATAATGGACTCGGGAAGCCATTCGTCGACTCTTGGTCGGTTATATGCTTGGGAGAAGAAACTCTATGAAGAGGTCAAGGCTGGGGACAGCATGCACAAACTGTATGAAAAAAGGTGTTCACGACTAAGAAGCCAGGACGTTAAAGGGAGCAATGGAATGACAACTGATAAAACTCGGGTTATGGTTAAAGATTTATACGCCAGGATCTTGGTCGCCATTCGAAGTGCTGAATCAATCTCGACAAGAATTGTGAATCTAAGAGATGACGAGCTACAACCTCAGATCGTAGAGCTATTAAAAGGCTTAACAAGAACTTGGAAAATCATGTTGGAAGTTCATGAAACCCAGAAAAAGATTATCCTTGAAGTGAAGACTTATTCCTGCCATTCCTATCTGAAGTTCTGTAACGAATCTCACCGTCTTGCAACTCTTCAGCTTGGAGCTGAGCTTCAGAATTGGCGTTCGTGTTTTTCAAAATATGTTGAATCACAGAAGGCTTATGTTGAAGCTCTCCATGGATGGCTGACCAAGTTTGTAGTGCCTGAGGATGAGTTCTGTTCTCGGGGTCGGACTTCCACTGTGCCTTATGGGCTGCATGGACCTCCATTGCTTTCAATCTGCCGTGATTGGCTATCATCCATGGAAAAATTACCAGATAAACCAGTAGCCTTTGCATTGAAAAGCTTTACAAAGGATATGAAGGCTCTATCAGATAAACAGATGGAGGAGCTGCAGCAAAAGAGAAGAGTTGAAAGCTTGGCAAAGGAACTCGACCGACGGATACTGTCCTTCCAGAAAACAGAGAACAAGTTCTTCGAGTTCAACTCTACCGAGCTGAAATCCGAGTCGGAAGTGGAAAATCAGAATGAGTACTTGACAGAAAAGAAAGATCAGCTAGACATGTTCAGGAAGAAGCTTGATTTGGAGAAGGAAAAACACAATAACTGCATTCAAGAAGCACAGAGGATTACATTAAATGGAATACAAACAGGGTTTTCCTCAGTTTTTGATTCCTTATCAGAGTTCTCCAAGGCTTCGCAAAAAATGTACGACCACCTAGTGAATTACAGTGAGAATGCCAATAAATCTAAGAACATTAACTATATCGAGGGTTCCTCCCAAACTGAAGAAAATGTAAGCAGATAA 2211 43.46 KQRILGGEEDIASFKHFLSNEEEEEEPAAAAALANREMGCVASKLEEEEEVVSICRERKRHIKLAVERRYALAEAHSKYCQALNAVSAAIKFFVARHSSPSPFLITFPPPCSSSSPPPSEKVIPNPMFLQQRPSDSTHEAIPACPSCACCSSSTSTESSMEEREEEPVEEERIEQVPAYFYMQMPPPMPSPQREFSWDFFNPFDTMRTDVVAGYRQSSEEEEGIPELEEETVEKNQRVEDVGEKEEENQLKKGLKVIDTPVEGRELLEALQDVEDYFIRAYDSGIDVSRMLEANKIQLQSGLEEIKENSTKLIQAITWHRSVSGKTSSCKSLVASSSKGSSPWTEFSNELFDDYDIMDSGSHSSTLGRLYAWEKKLYEEVKAGDSMHKLYEKRCSRLRSQDVKGSNGMTTDKTRVMVKDLYARILVAIRSAESISTRIVNLRDDELQPQIVELLKGLTRTWKIMLEVHETQKKIILEVKTYSCHSYLKFCNESHRLATLQLGAELQNWRSCFSKYVESQKAYVEALHGWLTKFVVPEDEFCSRGRTSTVPYGLHGPPLLSICRDWLSSMEKLPDKPVAFALKSFTKDMKALSDKQMEELQQKRRVESLAKELDRRILSFQKTENKFFEFNSTELKSESEVENQNEYLTEKKDQLDMFRKKLDLEKEKHNNCIQEAQRITLNGIQTGFSSVFDSLSEFSKASQKMYDHLVNYSENANKSKNINYIEGSSQTEENVSR 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3463463 3466735 - CmaCh20G007390.1 Cma20g00739 316553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00739 736 Coils Coil 647 667 - -
Cma20g00739 736 PANTHER OS09G0542500 PROTEIN 38 720 - -
Cma20g00739 736 Pfam Protein of unknown function (DUF632) 266 589 IPR006867 -
Cma20g00739 736 Pfam Protein of unknown function (DUF630) 38 97 IPR006868 -
Cma20g00739 736 PANTHER UNCHARACTERIZED 38 720 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00739 - - - cmax:111484590 1135.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma07g00413 Cma20g00739 CCT
Cma03g00671 Cma20g00739 CCT
Cma02g00270 Cma20g00739 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00808 Cma-Chr17:6355821 Cma20g00739 Cma-Chr20:3463463 2.48E-61 dispersed
Cma20g00019 Cma-Chr20:64582 Cma20g00739 Cma-Chr20:3463463 6.31E-07 dispersed
Cma20g00739 Cma-Chr20:3463463 Cma09g00786 Cma-Chr9:3810671 1.33E-08 dispersed
Cma02g00270 Cma-Chr2:1233109 Cma20g00739 Cma-Chr20:3463463 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g188 . . Bda06g00474 Bda08g00983 . . . . . . Cma02g00270 Cma20g00739 . Car20g00641 . . . . . . . . . . . . . . . . . . . . . Lsi10g00507 . Chy11g00243 . . . . . . . . . . Cmo02g00267 Cmo20g00736 . . . . Cpe16g00326 Cpe05g01362 . . . . . . . Cla02g01182 Cam02g1259 Cec02g1270 Cco02g1308 Clacu02g1241 Cmu02g1208 Cre02g1523 . Csa02g01406 . Cme11g00366
Vvi4g1147 . . . . . . . . . . Cma03g00671 Cma07g00413 Car03g00617 Car07g00363 . Cpe19g00870 Cpe10g00677 Bhi03g00838 . . . . . . Cla01g01993 Cam01g2092 Cec04g1749 Cco04g1814 . Cmu01g1986 Cre04g1663 Cone8ag0861 Cone12ag0824 . . Lsi01g00583 . . Cme08g00949 Blo05g00705 . . . . Bpe06g00133 . . . Cmo03g00696 Cmo07g00409 . Cma20g00739 . . . . . . . . . . . . . . . . . . . Csa06g03347 Chy02g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007141 2 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00739 Cma_Chr20 FPKM 0.567123 0.850995 1.512826 1.519554 1.319249 1.583527 1.320232 4.673923 5.529605 4.653967