Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00740 ATGTTCTCAGGGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGCGGTCGGATCGACATGTGCACAAAGGTTCAGATGCTGGTGGCCGACAGGATGGTCTCTTATGGTACAAGGATAGTGGACAACATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAATAATTTACTTGAGGATCAAAGCCAGATGGAGTCAGGCAATTTGAGCTTGCACGAGGCTGGGCCATATGGTACTTTTGTTGGTGTGTATGATGGGCATGGAGGGCCAGAGACATCTCGCTATGTAAATGATCATCTTTTCCAGCATCTTAAAAGGTTTACTTCCGAGCAACAGTCCATGTCGGTGGATGTCATACGAAAGGCGTTTCAAGCTACCGAAGACGGGGTCATTGCTCAAGTTACAAAACAATGGTCAATGAGGCCACTAATTGCAGCTGTTGGATCTTGCTGCCTTGTAGGTGTAATTTGTGGTGGAACTCTTTACATAGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTGAAGGCAACAGGGGAAGTTTTGTCTGTCCAGTTGTCTGCTGAGCATAATGCATCTATAGAGTCTGTGAGGCAGGAGCTCCGAGCCCTGCACCCTGATGATCCACATATTGTAGTCTTGAAGCATAATGTTTCTCGATCCATCGGCGATGTCTATTTAAAGAGAGCTGAGTTCAACCAAGAGCCTCTATATGCTAAATTTCGCCTTCGTGAACCTATCAAAACGCCCATACTGAACGCCGAACCATCTATTTCAGTGCTCCAATTGCAACCACAAGATCAATTTATTATATTTGCTTCAGATGGGCTTTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGCAATGGAAGTGCAAGGAGGTTAGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAGAGAGAAATGAGGTACTCCGATTTGAAGAAGATTGACCGTGGCGTACGACGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTCGACTCGAATCTTGTGAGCCGGGCTAGCTCTACAAAATGTGCAAGCCTATCCATGCGAGGGGGCGGAGTTAACTTGCATCCGAACTCATTGGCCCCTGGCATGGCCTGA 1146 46.42 MFSGLMNFLRACFRPRSDRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEDGVIAQVTKQWSMRPLIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVSRSIGDVYLKRAEFNQEPLYAKFRLREPIKTPILNAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSMRGGGVNLHPNSLAPGMA 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3468634 3472570 - CmaCh20G007400.1 Cma20g00740 316554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00740 381 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 375 - -
Cma20g00740 381 Gene3D - 36 358 IPR036457 -
Cma20g00740 381 CDD PP2Cc 48 346 IPR001932 -
Cma20g00740 381 SUPERFAMILY PP2C-like 59 347 IPR036457 -
Cma20g00740 381 Pfam Protein phosphatase 2C 79 315 IPR001932 -
Cma20g00740 381 ProSiteProfiles PPM-type phosphatase domain profile. 47 346 IPR001932 -
Cma20g00740 381 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cma20g00740 381 PANTHER ALPHABET, ISOFORM E-RELATED 5 375 - -
Cma20g00740 381 SMART PP2C_4 39 344 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00750 Cma20g00740 CCT
Cma11g01366 Cma20g00740 CCT
Cma02g00269 Cma20g00740 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00656 Cma-Chr3:5525611 Cma20g00740 Cma-Chr20:3468634 0 dispersed
Cma20g00740 Cma-Chr20:3468634 Cma04g00254 Cma-Chr4:1239018 3.12E-171 dispersed
Cma11g01366 Cma-Chr11:9047629 Cma20g00740 Cma-Chr20:3468634 0 wgd
Cma19g00750 Cma-Chr19:7473265 Cma20g00740 Cma-Chr20:3468634 0 wgd
Cma02g00269 Cma-Chr2:1227050 Cma20g00740 Cma-Chr20:3468634 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00740 - K01102 csv:101221640 727.243