Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00741 ATGACATTCTTCTGTAGAATAAACCAATCCAAGCTCAAGTCCCTTTCGGATCAATTCAAGAGACATTACTTTCAAATCTCTTATGCTGCGTCGCTCGATTCCGGTCGTATAACAAAACAAGTTCTTGGGTGTGTAGAGCGGACAATTCCCCGTAGACCAGCTTATTGTGGCGATAATGTTAGGTTCTTTGCTGCTCCAGTTCAGTTTCAAGGTAAGGCGAAGAAAGAAGAGAAGGACACAAGTGGGCCACGACTTAATGATAAAATCAAGGCCGACTTTGTGAGGCTTGTATCTGATGATGGACATACGGTTCTTAAGTTACATGAAGCTCTTGCACGTGCTCGTGAGCTCAATCTTGATTTGGTTGAGGTCCAAACAAAAGCCAACCCACCTGTCTGTAAAATTATGGATTTCCACAGAGAGAAATATAAACAGCAAATAAGGGAAAAGGACCGTGTTAAAAGCAAGGCTGAACTGAGTTTAAAAAAGGGAGATCACAAAGAAGTCCGCTTCACTGGGAAAACTGAGGAGAAGGACCTAAGGATGAAAGCTGATATGGTAAAGCGATTGATGGAACGTGGTTACCGTGTGAAGTGTAGTGCCAGGGGCGGTGAGGATCAGGACTTGGGTGGCTTGCTATCTCATCTTTCTGCTTTGATAGAGGATGTAGCAGTGGTGGAAAGTGGACCAAGGGTGGAAAGAGGGCAGGCATATGTTATAGTCAGGCATGTTAAATTTGGCCCCTCAAAGAAAGGGGGTGGCGGCAAAGCATCGAATGTTGTTGCAAATGCGAAGCAGAAGGCTCAAAATGACACCACCTCTCCGACTTCACCAGCCCGTTCTTCAAGCCCAAGGGAAGAAGCAATGGACCCTGAAGTTGATTTTGAGAGTTCTAAAGAAACTACCTGGTCCGTTGTTGATGGTAATAATGATTTTGACGAAGTGTTTGACTTGAAAGATGATGCTAATGGGACTCCCTCAAAAACTGCTGCCAAGAAAATGAATGTCTCGGACCTTTCTCAACCAAGGGGGTTGCCTGATTCTGGCCGAACCAGCTCTGTTCCACTCTCTCGACAAGATCCTTCCATCAAAGCCGATAATAGATACAAAAAGATCGAACCTGCAAACCGTTTTTTCCAACCACCAAATGTAATGGACAGCAAGGGTCGAGGTGCTAAAGATTCGCTCCAATCAGAACCCCAGATTCGTGATCAAAGGAGGCACACTCCGAACACAAACTTCTCGCCCTTGACGAGAGAAACCCGACGATATGAGGACAATGCTTCTGCATCAAGAAACATTAAGCCTGGTCCGCCACACAACACTGCTCCCAGTTCATCCAAAACTAGCTTTGGGATCTTCAGTTCTCTGAATGACAACGCTCCAGGAAAGCAAGATGCACCGGCCACAAGTTATCGAGGCAACCAAGGGCCTCCATACACGCCATCGACTAAGTCCTGA 1461 45.93 MTFFCRINQSKLKSLSDQFKRHYFQISYAASLDSGRITKQVLGCVERTIPRRPAYCGDNVRFFAAPVQFQGKAKKEEKDTSGPRLNDKIKADFVRLVSDDGHTVLKLHEALARARELNLDLVEVQTKANPPVCKIMDFHREKYKQQIREKDRVKSKAELSLKKGDHKEVRFTGKTEEKDLRMKADMVKRLMERGYRVKCSARGGEDQDLGGLLSHLSALIEDVAVVESGPRVERGQAYVIVRHVKFGPSKKGGGGKASNVVANAKQKAQNDTTSPTSPARSSSPREEAMDPEVDFESSKETTWSVVDGNNDFDEVFDLKDDANGTPSKTAAKKMNVSDLSQPRGLPDSGRTSSVPLSRQDPSIKADNRYKKIEPANRFFQPPNVMDSKGRGAKDSLQSEPQIRDQRRHTPNTNFSPLTRETRRYEDNASASRNIKPGPPHNTAPSSSKTSFGIFSSLNDNAPGKQDAPATSYRGNQGPPYTPSTKS 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3480104 3484847 + CmaCh20G007410.1 Cma20g00741 316555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00741 486 Gene3D - 76 151 IPR036787 GO:0003743|GO:0006413
Cma20g00741 486 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 82 152 IPR036787 GO:0003743|GO:0006413
Cma20g00741 486 Gene3D - 159 247 IPR036788 GO:0006413
Cma20g00741 486 MobiDBLite consensus disorder prediction 328 360 - -
Cma20g00741 486 Coils Coil 107 127 - -
Cma20g00741 486 MobiDBLite consensus disorder prediction 263 486 - -
Cma20g00741 486 Pfam Translation initiation factor IF-3, N-terminal domain 85 151 IPR019814 GO:0003743|GO:0006413
Cma20g00741 486 PANTHER TRANSLATION INITIATION FACTOR IF-3 1 473 IPR001288 GO:0003743|GO:0006413
Cma20g00741 486 PANTHER TRANSLATION INITIATION FACTOR IF3-1, MITOCHONDRIAL 1 473 - -
Cma20g00741 486 Coils Coil 136 156 - -
Cma20g00741 486 TIGRFAM infC: translation initiation factor IF-3 85 240 IPR001288 GO:0003743|GO:0006413
Cma20g00741 486 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 166 245 IPR036788 GO:0006413
Cma20g00741 486 MobiDBLite consensus disorder prediction 434 486 - -
Cma20g00741 486 MobiDBLite consensus disorder prediction 263 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00741 K02520 infC, MTIF3; translation initiation factor IF-3 - csv:101207030 543.502
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00268 Cma20g00741 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00268 Cma-Chr2:1213157 Cma20g00741 Cma-Chr20:3480104 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g185 . . . . . . . . . . Cma02g00268 Cma20g00741 . Car20g00643 . . . . . . . . . . . . . . . . . . Cone8ag1299 . . Lsi10g00505 . Chy11g00245 . . . . . . . . . Sed01g0181 Cmo02g00265 Cmo20g00739 . . . . Cpe16g00324 Cpe05g01364 Bhi10g01827 Tan05g1113 Cmetu11g1096 . Hepe08g0306 . . Cla02g01179 Cam02g1258 Cec02g1267 Cco02g1307 Clacu02g1240 Cmu02g1207 Cre02g1522 . Csa02g01404 . Cme11g01081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011500 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00741 Cma_Chr20 FPKM 14.685925 16.1138 13.841908 13.809411 15.685238 17.012848 16.012003 17.386877 17.678064 17.079611