Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00745 ATGATGATGATGATGGTGAAGTTGTTGATGTTTCTTAGCTTTGGTGGACTGTCAATGTGTGAGGTGTTTCTTGTTGGAGACGAAGAAGGCTGGAACTCTGGCATCAATTTTGCTACCTGGTCTCAAAACCACAATTTCACCAAAGGAGATTTTCTAGTTTTCAATTATGCAAAGAGTGTACACAATGTATATGAAGTTAGTGAGGAAACATTCAGATCATGCGAGACAAGTAATGGAGTATTGGGTGAATATGAGAGTGGAAATGATCGAATTGAGCTGAAAGAAGCAAGGAAGTATTGGTTCATATGTAATGTAGCTGGTCATTGCTTGGGCGGAATGAGGTTTGGAATTGATGTCAATGAAGCCAATCCTAGGAGCCATCTCCCACTTAGCCCTGTTCAATCTCCTCCCCCACCCACCAACCATGCCTCTCACCATGGAAGCTATGCACTATGGAGCTCTTTTATGGGTATGGTAGCATTTCAAACTCTGTTCGTCGAACAGTATCGGTAG 513 42.5 MMMMMVKLLMFLSFGGLSMCEVFLVGDEEGWNSGINFATWSQNHNFTKGDFLVFNYAKSVHNVYEVSEETFRSCETSNGVLGEYESGNDRIELKEARKYWFICNVAGHCLGGMRFGIDVNEANPRSHLPLSPVQSPPPPTNHASHHGSYALWSSFMGMVAFQTLFVEQYR 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3496253 3498326 + CmaCh20G007450.1 Cma20g00745 316559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00745 170 SUPERFAMILY Cupredoxins 20 119 IPR008972 -
Cma20g00745 170 CDD Phytocyanin 22 119 - -
Cma20g00745 170 ProSiteProfiles Phytocyanin domain profile. 21 121 IPR003245 GO:0009055
Cma20g00745 170 Gene3D - 19 124 IPR008972 -
Cma20g00745 170 PANTHER BLUE COPPER PROTEIN 3 132 IPR039391 GO:0009055
Cma20g00745 170 Pfam Plastocyanin-like domain 31 113 IPR003245 GO:0009055
Cma20g00745 170 PANTHER BLUE COPPER BINDING PROTEIN-LIKE 3 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00745 - - - cmax:111483949 342.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01052 Cma-Chr14:5543478 Cma20g00745 Cma-Chr20:3496253 5.04E-25 dispersed
Cma20g00745 Cma-Chr20:3496253 Cma01g01628 Cma-Chr1:11166199 1.66E-22 dispersed
Cma20g00745 Cma-Chr20:3496253 Cma05g00513 Cma-Chr5:2449337 1.87E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g175 . . . . . . . . . . . Cma20g00745 . Car20g00647 . . . . . . . . . . . . . . . . . . Cone8ag1293 . . Lsi10g00502 . Chy11g00247 . . . . Bda14g00622 Bpe15g00805 . . . Sed01g0184 . Cmo20g00742 . . . . Cpe16g00322 . Bhi10g01832 Tan05g1117 Cmetu11g1432 . Hepe08g0303 . . Cla02g01176 Cam02g1255 Cec02g1264 Cco02g1303 Clacu02g1237 Cmu02g1204 Cre02g1519 . Csa02g01401 . Cme11g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013153 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00745 Cma_Chr20 FPKM 33.068001 34.307056 0.0 0.608653 0.0 0.0 0.462669 2.174353 1.542466 0.859016