Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00746 ATGGAATTACGAGTCTTCATTCCTTGTTCTCTGTACGCTAAATTTCCAGAAGAAGACGTCAGAGATGAAATGGCGGAGTCAAACAATGGCGCCCAATTTACTTCCATTATCAGACTGTACCAACAACCAAATCGGAGCCAAGGTTTTCAAATGGCTGGAAAAGGAAATGAACGTTTAGATTGTACACATGCTTCCAATCCTTACCATGTCTGCTTTGAACACTGTTCTGAAAAGAAGGGTGAAAGCAAGAAGCAGATAGCTAGAAAGTATTCAGGCGATGGTGCGATGAAGTATAGCGGCGAACGCAAAAAGACGGTTCGTTCAGATTGCACTAATGGATCGAATCCTTACCACAACTGTAATGAATTCTGCTCAAACATAATCACTCATTCTGGCAGGCCAAGGGCAGAAAGGGATTCAGGTTCAGGTGGAGCAACGAAGGATTCGAGGCCAAAATCACCCCGAAAACTCAATGTATCTTCGGTGAGTGCCGTTTCGTTGAAACCTCAAGTAACTAAAGCCCGTGCTCTTCCAGTGGAAAAAACAAATTTGAGGAATGGTGACTATATCAAGCCGTATGATGGGGAAACTTGCTTTGTTGAAGACTCTTTGACGATCGAGGAAAAAAATAAATTCTCCCATTTGATTCTAGTTTCTGCAAATGCCCTGAAGACTGATGCTTCCTCAATTACTTATGTGAAATCAAAAGAAGACATTAATACAAGGCCTGATGAAGTTTCTGAAATAGTGCAAGATCCTCCACTTCATGATGAGGAAGAAGGTGGTCGTACTACCGCTTCACTCAATATCACTAGCTTTCCTTTCCCCGACATGGTTCGTAATCATATAAAATGGGACGAGGACGAAGTTAAATCAGTATTATCCGAGCCCTCTGTACCCGTGGGGAAGTACTATGTTAAAGCAAGTTCTGCTCCCATTCTGCAATCAATCTTCAACAAGCATGGAGACATAGCGGCTTCATGTAAACTGGAATCGACATCGATCCGCTCTTATTATTTGGAGAGTGTGTGCTATATCATTCAAGAGTTGCAGCACACAAAGTTCTCCCAGAAGGCGTCCAAGTCCAAAGTTAAAGAACTCTTAGCCATCATCAACGACTTGGTTTCTTCAGAAATGAACGTTGGTTGGTTGCATAGTATACTCAACGATGTTGCAGAAGCTGTTGAGTCCTCCAGCAGCCAACAATGGAGTCTGGAGGTGGCCAAGGCAAATTGCGACCACGAGTTGGAGCTGACCAAGAAAGAACTCGAATCTCGAGTCGAGGATTTAACACGAAAAGAAAAGGAAATGAGCAGTGCGAAGGCAAAAGTCGTCGACACCAGAGCTCGCTTGAGTGAACTCGAGCTCAAATATGGTCAGCTGAATGAGGAGATTTCATCTCTGCAGTTAAAGTGTGTTATTGGAGTAAGAGAAGTTGTTGCAAAGATGTCCGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTCTAATCCTTATCATGAATGCACCGAATACTGTTTTAAAGTAATAGCTGAAGTCAAAGCCCGGAATCAGCAAAATGAGCCAGTTCCCACATCATCAGAAGGTGTTCAAGCTGGTCGAAGTAGTGGTTCTTCTAATTTTGTGCCTCCTGATGAGTATGAAGATCTTCGTGACGAAAAGCCGAATGAAGAAGGGCACAGTGATGGTGATACTGACAAATTTAGTGGTGGGGAGAATGTGGAAGGAGACTTCACAAAACTCACGGGGAGGAAAAAGAAATTGTTTGAAATTAGGCTTAAGATGAATGAGGCGCGCAAAGCTAATCAAACAGCAATTGCTGCTGAAAAAAAGAAAATGGAACCTCCATCAGAATCAAGAGGTATTTCTAAACAAAAGTGGCTTGAGGATCGGAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGCTTGGACATGAGTAAAGCATATATGTTAGATACACAAGAGGCAGCAGAGTCCAAATACAAGAAATGGGAGAAGGATCCAGCTCCCTATGGATGGGATGTCTTTAACCAGAAAACATTGTATGATGCATACAAAAAGAGGACAAAGAATGTGAATGTTGACCTTGAGGAATATAATAAGATGAAAGATTCTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAATATGGAAAGGCACCTAAGATTTCAGAGGATAAGATAGACAATATGGTGAAAGAACTCAAGGACCGAGAGGAGAAGCGAAAGTCGTTTAGCCGTAGGAGGAAGTTTCATGAAGACAAGGATATTGATTCTATCAATGACCGCAATGAGCATTTCAACAAAAAGATCGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCATTACCTGATTAA 2394 42.23 MELRVFIPCSLYAKFPEEDVRDEMAESNNGAQFTSIIRLYQQPNRSQGFQMAGKGNERLDCTHASNPYHVCFEHCSEKKGESKKQIARKYSGDGAMKYSGERKKTVRSDCTNGSNPYHNCNEFCSNIITHSGRPRAERDSGSGGATKDSRPKSPRKLNVSSVSAVSLKPQVTKARALPVEKTNLRNGDYIKPYDGETCFVEDSLTIEEKNKFSHLILVSANALKTDASSITYVKSKEDINTRPDEVSEIVQDPPLHDEEEGGRTTASLNITSFPFPDMVRNHIKWDEDEVKSVLSEPSVPVGKYYVKASSAPILQSIFNKHGDIAASCKLESTSIRSYYLESVCYIIQELQHTKFSQKASKSKVKELLAIINDLVSSEMNVGWLHSILNDVAEAVESSSSQQWSLEVAKANCDHELELTKKELESRVEDLTRKEKEMSSAKAKVVDTRARLSELELKYGQLNEEISSLQLKCVIGVREVVAKMSDEGRVHPDCRNASNPYHECTEYCFKVIAEVKARNQQNEPVPTSSEGVQAGRSSGSSNFVPPDEYEDLRDEKPNEEGHSDGDTDKFSGGENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMSKAYMLDTQEAAESKYKKWEKDPAPYGWDVFNQKTLYDAYKKRTKNVNVDLEEYNKMKDSDPEFYREASSLQYGKAPKISEDKIDNMVKELKDREEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTLEIKNNLERGTALPD 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3501067 3507432 + CmaCh20G007460.1 Cma20g00746 316560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00746 797 MobiDBLite consensus disorder prediction 740 766 - -
Cma20g00746 797 MobiDBLite consensus disorder prediction 519 580 - -
Cma20g00746 797 MobiDBLite consensus disorder prediction 519 543 - -
Cma20g00746 797 MobiDBLite consensus disorder prediction 132 163 - -
Cma20g00746 797 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 282 471 IPR007942 -
Cma20g00746 797 PANTHER GCIP-INTERACTING PROTEIN P29 483 797 IPR013260 -
Cma20g00746 797 PANTHER PRE-MRNA-SPLICING FACTOR SYF2 483 797 - -
Cma20g00746 797 MobiDBLite consensus disorder prediction 546 580 - -
Cma20g00746 797 MobiDBLite consensus disorder prediction 132 154 - -
Cma20g00746 797 Pfam SYF2 splicing factor 643 790 IPR013260 -
Cma20g00746 797 Coils Coil 731 751 - -
Cma20g00746 797 Coils Coil 413 471 - -
Cma20g00746 797 PANTHER PRE-MRNA-SPLICING FACTOR SYF2 103 217 - -
Cma20g00746 797 PANTHER GCIP-INTERACTING PROTEIN P29 103 217 IPR013260 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00746 K12868 SYF2; pre-mRNA-splicing factor SYF2 - cmax:111483943 934.095
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00265 Cma20g00746 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01374 Cma-Chr11:9074529 Cma20g00746 Cma-Chr20:3501067 6.57E-07 wgd
Cma19g00745 Cma-Chr19:7430116 Cma20g00746 Cma-Chr20:3501067 4.96E-06 wgd
Cma02g00265 Cma-Chr2:1198444 Cma20g00746 Cma-Chr20:3501067 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g173 . . . . . . . . . . Cma02g00265 Cma20g00746 . Car20g00648 . . . . . . . . . . . . . . . . . . . . . Lsi10g00501 . Chy11g00249 . . . . . . . . . Sed01g0188 Cmo02g00261 Cmo20g00743 . . . . Cpe16g00321 Cpe05g01367 Bhi10g01837 Tan05g1122 Cmetu11g0186 . Hepe08g0301 . . Cla02g01175 Cam02g1254 . Cco02g1302 Clacu02g1236 Cmu02g1203 Cre02g1518 . Csa02g01399 . Cme11g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005153 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00746 Cma_Chr20 FPKM 19.955376 22.082798 24.952707 28.348652 16.92281 16.071709 19.249281 29.414835 28.845449 29.295616