Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma20g00750 | ATGGAAGAAGGCGAGCTTGAATCCTCAAATCCAGAAGTGTTTTCGAGTTCGAATGCCGTAGAGCTTCCGAACAGTTGCTCAATGGATACCTTCTTGGATGAAATTTTAAAGGACACTCATGCTTGCACACACGCTCATACTTGCAATCCTTCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACTAAAGTTGTCTCTTCCCCGACCGAAGACAAGGTTTCCACTGACGACACAGCGGAGTCTGTGGATAAGAAGACTAAGAAACGCTCGCTAGGTAACCGCGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTATGAGATTGACGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGCCAGGCTGCATTGGAGGCTGAGATTTCTAGGCTCAAATGTTTGCTTGTGGATATTCGAGGAAGAATTGAAGGGGAGATTGGAAGCTTTCCATATCATAAACCAGCCAATTCAAATCTTCTCAACCAAAATGCACCTGGAAGTTATGTGATAAATCCATGTAATGTTCAATGCAACGATCAGCCGTATTGCCTTAATGCAGGGACCGATGGAAAAAGTGGAGAGAGCGTTTTGTTGAACGGGCATAGTTTTAGTGCGTGTGACATCGGAAATCTCGAGTGCTTGGCCAATCAAAACACAGGAGCAAACGAACTTCCGGACTGTGAATTAAACCAGAAGAAAGGGGTCCATAAGGCGACGAAAAATGCGAAGAGCTGA | 780 | 45.0 | MEEGELESSNPEVFSSSNAVELPNSCSMDTFLDEILKDTHACTHAHTCNPSGPDYSHTHTCFHVHTKVVSSPTEDKVSTDDTAESVDKKTKKRSLGNREAVRKYREKKKARAASLEDEVMRLTALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGSFPYHKPANSNLLNQNAPGSYVINPCNVQCNDQPYCLNAGTDGKSGESVLLNGHSFSACDIGNLECLANQNTGANELPDCELNQKKGVHKATKNAKS | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 3517913 | 3520799 | - | CmaCh20G007500.1 | Cma20g00750 | 316564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma20g00750 | 259 | Coils | Coil | 98 | 132 | - | - | |
Cma20g00750 | 259 | MobiDBLite | consensus disorder prediction | 72 | 98 | - | - | |
Cma20g00750 | 259 | SMART | brlzneu | 84 | 152 | IPR004827 | GO:0003700|GO:0006355 | |
Cma20g00750 | 259 | SUPERFAMILY | Leucine zipper domain | 89 | 134 | IPR046347 | GO:0003700|GO:0006355 | |
Cma20g00750 | 259 | Pfam | Basic region leucine zipper | 87 | 142 | IPR004827 | GO:0003700|GO:0006355 | |
Cma20g00750 | 259 | MobiDBLite | consensus disorder prediction | 77 | 98 | - | - | |
Cma20g00750 | 259 | Gene3D | - | 76 | 153 | - | - | |
Cma20g00750 | 259 | CDD | bZIP | 97 | 144 | - | - | |
Cma20g00750 | 259 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 240 | - | - | |
Cma20g00750 | 259 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700|GO:0006355 | |
Cma20g00750 | 259 | PANTHER | BASIC LEUCINE ZIPPER 23 | 1 | 240 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma19g00738 | Cma20g00750 | CCT | |
Cma11g01382 | Cma20g00750 | CCT | |
Cma02g00259 | Cma20g00750 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01382 | Cma-Chr11:9117381 | Cma20g00750 | Cma-Chr20:3517913 | 9.57E-123 | wgd | |
Cma19g00738 | Cma-Chr19:7389350 | Cma20g00750 | Cma-Chr20:3517913 | 8.09E-129 | wgd | |
Cma02g00259 | Cma-Chr2:1176817 | Cma20g00750 | Cma-Chr20:3517913 | 8.73E-159 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37029 | PF07716 | bZIP_2 | 9.00E-15 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma20g00750 | K25785 | - | cmax:111483945 | 520.776 |