Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00750 ATGGAAGAAGGCGAGCTTGAATCCTCAAATCCAGAAGTGTTTTCGAGTTCGAATGCCGTAGAGCTTCCGAACAGTTGCTCAATGGATACCTTCTTGGATGAAATTTTAAAGGACACTCATGCTTGCACACACGCTCATACTTGCAATCCTTCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACTAAAGTTGTCTCTTCCCCGACCGAAGACAAGGTTTCCACTGACGACACAGCGGAGTCTGTGGATAAGAAGACTAAGAAACGCTCGCTAGGTAACCGCGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTATGAGATTGACGGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGCCAGGCTGCATTGGAGGCTGAGATTTCTAGGCTCAAATGTTTGCTTGTGGATATTCGAGGAAGAATTGAAGGGGAGATTGGAAGCTTTCCATATCATAAACCAGCCAATTCAAATCTTCTCAACCAAAATGCACCTGGAAGTTATGTGATAAATCCATGTAATGTTCAATGCAACGATCAGCCGTATTGCCTTAATGCAGGGACCGATGGAAAAAGTGGAGAGAGCGTTTTGTTGAACGGGCATAGTTTTAGTGCGTGTGACATCGGAAATCTCGAGTGCTTGGCCAATCAAAACACAGGAGCAAACGAACTTCCGGACTGTGAATTAAACCAGAAGAAAGGGGTCCATAAGGCGACGAAAAATGCGAAGAGCTGA 780 45.0 MEEGELESSNPEVFSSSNAVELPNSCSMDTFLDEILKDTHACTHAHTCNPSGPDYSHTHTCFHVHTKVVSSPTEDKVSTDDTAESVDKKTKKRSLGNREAVRKYREKKKARAASLEDEVMRLTALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGSFPYHKPANSNLLNQNAPGSYVINPCNVQCNDQPYCLNAGTDGKSGESVLLNGHSFSACDIGNLECLANQNTGANELPDCELNQKKGVHKATKNAKS 259
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 3517913 3520799 - CmaCh20G007500.1 Cma20g00750 316564
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00750 259 Coils Coil 98 132 - -
Cma20g00750 259 MobiDBLite consensus disorder prediction 72 98 - -
Cma20g00750 259 SMART brlzneu 84 152 IPR004827 GO:0003700|GO:0006355
Cma20g00750 259 SUPERFAMILY Leucine zipper domain 89 134 IPR046347 GO:0003700|GO:0006355
Cma20g00750 259 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Cma20g00750 259 MobiDBLite consensus disorder prediction 77 98 - -
Cma20g00750 259 Gene3D - 76 153 - -
Cma20g00750 259 CDD bZIP 97 144 - -
Cma20g00750 259 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 240 - -
Cma20g00750 259 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cma20g00750 259 PANTHER BASIC LEUCINE ZIPPER 23 1 240 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma19g00738 Cma20g00750 CCT
Cma11g01382 Cma20g00750 CCT
Cma02g00259 Cma20g00750 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01382 Cma-Chr11:9117381 Cma20g00750 Cma-Chr20:3517913 9.57E-123 wgd
Cma19g00738 Cma-Chr19:7389350 Cma20g00750 Cma-Chr20:3517913 8.09E-129 wgd
Cma02g00259 Cma-Chr2:1176817 Cma20g00750 Cma-Chr20:3517913 8.73E-159 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37029 PF07716 bZIP_2 9.00E-15 CL0018 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00750 K25785 - cmax:111483945 520.776