Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00752 ATGACTGTTGATCATGAGGATTCTGAGGCAATCGAAAAGAAGAAGAGGAAGAAGAATGTGTTAGTGGGGATTAGGATAAATGGCAATAGCAGAGATTTGCTCAATTGGGCGATTGTTAAAGTTGCTGATCCTGGGGATTGTGTTATTGTAATCCATGTTTGTCAAACTTCTGACCGTGCATCAAAAGATAAGCCCTTATTTGATGAATTCATAGAAGGATACAAAAGGCTTTGTGATGTAAACAAGGTAGCTCTGATTGCTCAGATATTGACTGGAAGTTCGGTTAAGAAGACTTTGGTTAGACAGGCGAAAAGCTATGCCGCCGGGGCTGTGGTTTTGGGAACAAGCAAACCATCTAATCTTGGGGGTTGGTCTTCAACAATTAGATACGCTGTTAAGCGACTGCCTCGAACGACCGATGTTTTGGCTCTCAACAATGGAAAAATTGTCTTCAGAAGATCCACCAATGATCAACTACCAGGGTTGAATCTAGACCCAAAACCAAGTTTAAGTCAAGCTAGCCAATCTGACTATGATGGCTCTGAGACTGAGAAATCTGTTTCTTTTGGGGTTGGTAGTGAAGACTTGAAGTATGAATTTCATGGAGTTGTTCTTGAAAGTAAAAGGGTCTGTTCCAAACAAGATTCTCCAATGAAGAAGGTGAATTCCGAGCCGGGGCTTGGATGGCCATTGCTTCGAACGTCTCCAAGGATTCCGCAAACCCCATGTGTACATAACATGTCTGTAGTGCAATGGGTGATGAACTTACCTGATCGTTCCCCGTATCATAGCTTAAGCATAAAAGGAAATGATCCATCAAGAAGGGAGATCTCGGGTTTATCTGCCTTTTCTGAACCACCAGGAAACCTGGAGGATCTCCTGAAAACTATCTCATCTAGTTATAAATGGTTTAGTCCTGATGTGTTGAAAGCTTCAACTTCGCATTTCTCTTCAGAAAATCTGATTGGGAAAGGCGGCTGCAATCGTGTATACAAAGGAATTCTCCCAGATGGTAAGCCAATAGCTGTTAAGGTAATGAACTTTTCGAAACAGGCATGGAACGATTTTTCTCGAGAAGTTGACATTATATCCTCGTTACATCACAAGAACATAACTCCCTTTCTCGGTATCTGCATCGAACACGATACGTTGATCTCTGTTTATGATTTCTTTTCCAAAGGAAGTTTAGAGGAAAATTTATATGATAGAAACAAAGAAAAAGGCATACTTTCATGGGAGGTAAGATTTGAGTTTGCGATTGGAATAGCGGAAGCGCTAAACTACCTACACGACGAATGTCCTCAGCCTGTTGTACACAGAGATGTGAAGACATCAAACATTCTGCTCACTGATGAACTCGGACCACAGTTATCAGATTTTGGGCTTGCAACCTGGGGACCAACAGAATCATCCTTTCGGATCGAAGCTGATGTCGTGGGAACGTTTGGATATCTTGCTCCTGAATATTTCATGTATGGAAAAATGAGCAATAAGATTGATGTGTATGCCTTCGGTATCGTTCTACTTGAATTGTTGTCGGGACGAAGAGCAATTGACGCAGAGACATCGAAAGAGCAGCAGAGCTTGGTTATGTGGGCCAAGCCAATGATAGAGAGTGGCAATGTAAAGGAAATAGTTGATCCAAATTTGGAGGGGAAAGTCAATGACGAACAGTTGCAAAGAATGGTTCTTGCAGCAACGCTTTGCATCACGAGGGCATCTCGACTCCGTCCTCGAATCAGTCAGATATTGAAGATTCTAAGAGGGGAGAGCGAAAACGAATCCAAAACCAAAACCGAAAGCTTCCTTATGGAGGATTCACAAAGCGTGGAGAATGGAGATGATGAAGTTTATCCAAATTCAAGCTCTGAACTGCATTTGAGCCTTGCATTGGTCGGTGTTGATGACGACGACGACAACGACGACTCATGTAGCAGTGTGGAACAGCGAAAAAGAGTATGTTTGGAAGATTATTTCAAAGCAAGATGGAGCAGATCCTCAAGCTTCAACCAGCTTCTTTAG 2022 42.38 MTVDHEDSEAIEKKKRKKNVLVGIRINGNSRDLLNWAIVKVADPGDCVIVIHVCQTSDRASKDKPLFDEFIEGYKRLCDVNKVALIAQILTGSSVKKTLVRQAKSYAAGAVVLGTSKPSNLGGWSSTIRYAVKRLPRTTDVLALNNGKIVFRRSTNDQLPGLNLDPKPSLSQASQSDYDGSETEKSVSFGVGSEDLKYEFHGVVLESKRVCSKQDSPMKKVNSEPGLGWPLLRTSPRIPQTPCVHNMSVVQWVMNLPDRSPYHSLSIKGNDPSRREISGLSAFSEPPGNLEDLLKTISSSYKWFSPDVLKASTSHFSSENLIGKGGCNRVYKGILPDGKPIAVKVMNFSKQAWNDFSREVDIISSLHHKNITPFLGICIEHDTLISVYDFFSKGSLEENLYDRNKEKGILSWEVRFEFAIGIAEALNYLHDECPQPVVHRDVKTSNILLTDELGPQLSDFGLATWGPTESSFRIEADVVGTFGYLAPEYFMYGKMSNKIDVYAFGIVLLELLSGRRAIDAETSKEQQSLVMWAKPMIESGNVKEIVDPNLEGKVNDEQLQRMVLAATLCITRASRLRPRISQILKILRGESENESKTKTESFLMEDSQSVENGDDEVYPNSSSELHLSLALVGVDDDDDNDDSCSSVEQRKRVCLEDYFKARWSRSSSFNQLL 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3523383 3526284 - CmaCh20G007520.1 Cma20g00752 316566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00752 673 Gene3D Phosphorylase Kinase; domain 1 289 390 - -
Cma20g00752 673 MobiDBLite consensus disorder prediction 595 620 - -
Cma20g00752 673 PANTHER OS08G0249100 PROTEIN 16 646 - -
Cma20g00752 673 SMART serkin_6 316 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00752 673 ProSiteProfiles Protein kinase domain profile. 316 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00752 673 SUPERFAMILY Protein kinase-like (PK-like) 296 587 IPR011009 -
Cma20g00752 673 Pfam Protein kinase domain 317 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma20g00752 673 MobiDBLite consensus disorder prediction 602 620 - -
Cma20g00752 673 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 16 646 - -
Cma20g00752 673 CDD USP_Like 19 142 - -
Cma20g00752 673 Gene3D HUPs 3 142 IPR014729 -
Cma20g00752 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Cma20g00752 673 Gene3D Transferase(Phosphotransferase) domain 1 391 613 - -
Cma20g00752 673 MobiDBLite consensus disorder prediction 159 186 - -
Cma20g00752 673 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00752 - - - csv:101206547 1063.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00258 Cma20g00752 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00752 Cma-Chr20:3523383 Cma20g01050 Cma-Chr20:7838863 2.42E-21 dispersed
Cma03g01046 Cma-Chr3:7233056 Cma20g00752 Cma-Chr20:3523383 3.04E-14 transposed
Cma19g00767 Cma-Chr19:7564371 Cma20g00752 Cma-Chr20:3523383 9.96E-07 wgd
Cma02g00258 Cma-Chr2:1171159 Cma20g00752 Cma-Chr20:3523383 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69398 PF00069 Pkinase 1.90E-40 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00752 Cma_Chr20 FPKM 39.309467 41.118351 17.632061 17.302794 18.617163 18.708857 16.933704 9.210314 10.225623 8.55861