Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00754 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCTGCCCCTTCTTCTTCGTCTTCTGGTCCCACTACCCGTTCTACCAAGCGCGCTCGTCTCTCTGGCACTTTCTCTTCGAATCTTGCTGCATCCACTCTTTCGATCTCAACACGTTCTCGTTCTACTCGAAACCAAGAACCATCTGCCACTAGTACTCCAATGGACTCGACCAATGAATCATCAGGGTCACGCCGACGCGGGAAGAATTCTGACAAGGAAAACTCGGATAAGGGGAAGGAGAAAGAACACGAGGTTAGAATCGGGGATAGAGAAAGAAATGCTGAGCAGAGCTTTGGGTTAAATATTGAAGGCAGTGGCGGTGGGGATGATGATGATAACGACAGTGAAGGAGGAATGGGAGTCTTACAGCAAAATTTATCCACAGCAAGCAGCGCCCTTCAAGGACTTCTGAGGAAACTCGGTGCTGGACTGGATGATTTACTTCCATCTTCTGCAATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAGATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGAAGGCAGGTTGAGGCATTGACCCAACTTTGTGAGATGCTCTCTATTGGCACCGAGGAGTCTCTAAGTACTTTCTCTGTGGATTCCTTTGTCCCTGTCCTCGTTGGGCTACTTAATCACGAAAGCAATCCTGATATAATGCTTTTAGCGGCCAGGGCACTGACCCATCTGTGCGATTTCCTACCTTCATCATGTGCTGCTGTCGTGCATTATGGTGCTGTTTCCTGCTTCTGTGCTAGATTGCTGACTATAGAATACATGGACCTTGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAAGAACACCCTACTGCCTGTCTGCGGGCTGGTGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCCACAGGAGTTCAGAGAGTTGCATTGTCAACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCCGACTTCGTGATGGAAGCTGTTCCCCTGCTGACGAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGTATTGCCGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTGTGTAACCATGGACTTGTTACTCAAGCTGCCTCACTCATTTCCACCAGTAGTACCGGAGGTGGGCAGTCAACTCTTAGCTCAGCTACTTACACAGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTAGGTGGGAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATTCATCTGTTTCGCCTGCATTAAATAGACCACAAGAGCAGGATTCAAATTTTTACGCCTTCTACAATTCCAAGCTTCAGACACTGAATGTTGCTTTCTTTGGTAATGGCGTGGTTTCTTGGATTTTTGAGATTGTCAACTTGGCAAATGAGCTTCTACCCCCTCTACCTCAAGGAACTATTTCCTTTCCGTCCAACTATAATTTGTTTGTGAAAGGACCTGTCATCAAAAAGCCATCTACCAGCGGTTCTGTGAAAGAAGAAGATCCAACTGATAGTGTCCCGGAGGTGTCAGCTCGTGAGAAACTCTTGAAGGATCAGCCTGAGCTCCTCCACCAGTTTGGAATGGATCTCCTTCCTATCTTAATACAGATCTATGGTTCCAGTGTGAATGGTCCGGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATTTTGATTCCTTCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCCTGAAACTTTTTCTAAGATGTTCCTTCGAGAGGGCGTGGTTTATGCTGTTGACCAGCTTATCTTAGCTAATAACCAAAATACTTCTACCCAAGTGGCTTCTGTTGAGAAGGACAACAACTCGGCATCTGGAGCTTCTTCACGCACTCGACGTTACAGGCGGCGCAGTGGAAATATGACTTCAGAAGGAAGTTCTCTGGATGAAAACAAAAATCCTGTTTCTGGAGGAAGTGTTCCACAAGGTTCGGTGGAGGTTCCATCAATTAACTCAAATCTCCGAACTTCTGTAAGTGCCTGTGCCAATGCTTTTAAAACAAAGTATTTCCCTTTAGATCCGGGAGATGTTGAAGTTGGAGTTACAGATGATCTCTTACGTTTGAAGAATCTTTGCGCCAAGTTGAATGCTGGTATTGATGTTCAGAAAAGTAAATCGAAAGGAAAGTCGAAAGCTTCGGGGTCCCGCATAGATGATATTATTACAAATAAGGAGCAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTAGGCAAAGATGATGGTGTTTCCACTTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTGACTACTTTTCTTGTGGATACTTTTCTAAAGGAAGAATTTTGGAAGCGGAGTTGCCAAAGATTCGGCAGCAAGTGCTTAAAAGATTTAAATCATTTGTTTCTGTTGCTCTTTCCACAAGCATTAATGAGGGGACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTGCTTTATCCTCATTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCATCCAGTGGTAGTGCACGTCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTGCGACTTTGTCGAGCCCATGGAGAAAAATTACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAATTTCTGTGGCCTAGAGTTCAGAGAAGTGAGGGTCAGAAACTTTCAGTATCTGGTGCAAACTCAGATTCAGGAACTATGCCTCCAGGAACTGTTGCTCCATCAGGGCTAAAATCAACCCCCAGTCCAACCACTTGTCGTTACTCTACTAGGTCTAGATCGTCGATGACTATTGGAGAAAGGGCAGGGAAGGAATTGTCACAGGATAAAAGCACATCAAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCCTACAAACTAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGTAAATGGAGAGACCACTTCTGAGGATGAAGAATTGGACCTATCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCACGATGATGTGCTGCAGGATGACTCTCTTCCACTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGTGACACAGCTGAAGATGGCGATGCTGGTCCGGCTACAAGTGATAGCCAGATTCCTTCAACTTTTGGCTCTAGCAGTAGAACTGCGACGGCCAGGGGTTCTAATTCTCCTGATCATAGGGGTGGCAATTCTTTTAGTGCAAGGGGAGGTATGACATTTGCTGCTGCTGCTATGGCTGGACTTGGACCAGCTAACGGCAGAGGTTTCCGTGGAGGTCGGGATCCACAGGGACATCCTCTCTTTGGTGGTTCCAATGATAACCCAAAATTACTCTTTTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGGCAACTTGTTTTGAATGAGGATGATGATGAGAGGTTTGCTGGGGCTGGCAATGATTTCTTATCTAATGATGGGAGCAGTTTGTGGGGTGATATATATACCATCACGTATCAGAGGGCAGATAATCAATCTGAAAGAGCTGCTTTAGCTGGGGAATCAAGCTCCTCTAAATCTAAATCTACCAAATGTGTATCAACTTCCAATTCAAATTCAGAGTCTCAGTTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTGGACAAATCTAATTCTACATATGATATACTATCTTTATTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCTCGCTTGAGGGCTCAAATAGTGTCGGATCAATTTGCAGAGGGAAAGATCACTACGCTTGATGAATTGGGTGGAATTGGAGGAAAGGTTCCTCATGAGGAATTTGTTAACAGTAAGCTTACTCCCAAATTGACTCGACAAATTCAAGACGCTCTTGCACTATGCAGTGGGAGCCTTCCTTCATGGTGTTATCAATTGACTAAGGCATGCCCGTTCTTGTTTCCTTTTGAGACACGACGACAATATTTTTATTCAACTGCATTTGGGTTGTCACGTGCGTTATATCGGCTACATCAGCAGTTAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGCCAAAAGGTTCGTGTCTCCCGTAATCGTATATTGGATTCTGCTGTGAAAGTTATGGAGATGTATTCTAACCAGAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACTCTTGAATTCTACACACTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAATAGATAGTGGTGAAGATGGACAGCTCAGGAAGCCAAAAGATGGCTCTAAGCTTATTTCTGATGCAGGCAATATTGATATCATTCAATCTCCTCTTGGGTTGTTTCCACAACCTTGGCAACCAAATGCTGATTCTTCTGATGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCTAAAGCTTTGCAAGATGGAAGACTATTGGATCTACCGCTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTGTACGATATCCTCTCATTTGACCCTGAGCTTGGGAAGACTCTACAAGAACTGCAGGCTCTTGTCTGCCGGAAACAGTATTTAGGATTGGTAGACGGTGACAATCAAAATACAATTTCCAACTTATCTTTCCGTGGGATTCCAGTTGAAGATCTCTGCTTGGATTTTACAGTTCCTGGCTATCCGGACTACGTTTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTACATATCCTTAGTATTAGATGCAACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTACAGGATTCAATCAGGTTTTTGACATCACAGCATTACGCATATTCATTCCCCATGAGTTGGACCATTTGCTATGTGGCCGTAGAGAATTGTGGAAGGCTGACACACTTGTTGATCATATTAAATTTGATCATGGATACACAGCCAAAAGTCCTGCCATAGTCAATTTTCTTGAGATTATGGGCGAATTCACACCGGAGCAGCAGAGAGGATTCTGCCAATTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGCTGAATCCAAGATTGACTATCGTGAGAAAGCACTCATCCACTGCATCAAACGCAGCAAACAGCGCGACTGGGGCATCTGAATCAGCAGACGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCATACTCGACCAAGGAAATAATGTACAAGAAACTAATGTATGCGATCAATGAGGGGCAAGGATCATTTGATTTGTCATGA 5754 43.81 METRSRKRAEASSAAPSSSSSGPTTRSTKRARLSGTFSSNLAASTLSISTRSRSTRNQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNAEQSFGLNIEGSGGGDDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDFLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLSSATYTGLIRLLSTCASGSALGGKTLLLLGISGILKDILSGSGVSTNSSVSPALNRPQEQDSNFYAFYNSKLQTLNVAFFGNGVVSWIFEIVNLANELLPPLPQGTISFPSNYNLFVKGPVIKKPSTSGSVKEEDPTDSVPEVSAREKLLKDQPELLHQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPSLQIAEILMEKLPETFSKMFLREGVVYAVDQLILANNQNTSTQVASVEKDNNSASGASSRTRRYRRRSGNMTSEGSSLDENKNPVSGGSVPQGSVEVPSINSNLRTSVSACANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCAKLNAGIDVQKSKSKGKSKASGSRIDDIITNKEQYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLDYFSCGYFSKGRILEAELPKIRQQVLKRFKSFVSVALSTSINEGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAHGEKLLRDYSSNIVLIDPLASLAAVEEFLWPRVQRSEGQKLSVSGANSDSGTMPPGTVAPSGLKSTPSPTTCRYSTRSRSSMTIGERAGKELSQDKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTAEDGDAGPATSDSQIPSTFGSSSRTATARGSNSPDHRGGNSFSARGGMTFAAAAMAGLGPANGRGFRGGRDPQGHPLFGGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGNDFLSNDGSSLWGDIYTITYQRADNQSERAALAGESSSSKSKSTKCVSTSNSNSESQFHQMSLLDSILQGKLPCDLDKSNSTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITTLDELGGIGGKVPHEEFVNSKLTPKLTRQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQLGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAVKVMEMYSNQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESIDSGEDGQLRKPKDGSKLISDAGNIDIIQSPLGLFPQPWQPNADSSDGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLYDILSFDPELGKTLQELQALVCRKQYLGLVDGDNQNTISNLSFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTTGFNQVFDITALRIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRGFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTASNAANSATGASESADDDLPSVMTCANYLKLPPYSTKEIMYKKLMYAINEGQGSFDLS 1917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3535112 3550794 - CmaCh20G007540.1 Cma20g00754 316568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00754 1917 MobiDBLite consensus disorder prediction 535 554 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 987 1031 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 1210 1231 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 1158 1187 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 1301 1325 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 680 696 - -
Cma20g00754 1917 Gene3D Hect, E3 ligase catalytic domains 1433 1679 - -
Cma20g00754 1917 SMART hect_3 1507 1917 IPR000569 GO:0004842
Cma20g00754 1917 MobiDBLite consensus disorder prediction 10 73 - -
Cma20g00754 1917 Gene3D Hect, E3 ligase catalytic domain 1788 1915 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 680 735 - -
Cma20g00754 1917 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 498 1917 IPR045322 GO:0006511|GO:0061630
Cma20g00754 1917 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 50 475 IPR045322 GO:0006511|GO:0061630
Cma20g00754 1917 Gene3D - 166 464 IPR011989 -
Cma20g00754 1917 CDD HECTc 1493 1912 IPR000569 GO:0004842
Cma20g00754 1917 MobiDBLite consensus disorder prediction 74 106 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 707 735 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 1037 1080 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 1092 1127 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 1135 1149 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 538 554 - -
Cma20g00754 1917 MobiDBLite consensus disorder prediction 1 134 - -
Cma20g00754 1917 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 498 1917 - -
Cma20g00754 1917 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 50 475 - -
Cma20g00754 1917 ProSiteProfiles HECT domain profile. 1517 1917 IPR000569 GO:0004842
Cma20g00754 1917 Pfam HECT-domain (ubiquitin-transferase) 1541 1917 IPR000569 GO:0004842
Cma20g00754 1917 MobiDBLite consensus disorder prediction 987 1192 - -
Cma20g00754 1917 SUPERFAMILY ARM repeat 177 673 IPR016024 -
Cma20g00754 1917 SMART arm_5 209 250 IPR000225 GO:0005515
Cma20g00754 1917 SMART arm_5 335 373 IPR000225 GO:0005515
Cma20g00754 1917 SMART arm_5 292 332 IPR000225 GO:0005515
Cma20g00754 1917 SUPERFAMILY Hect, E3 ligase catalytic domain 1485 1910 IPR035983 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00754 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 3251.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00257 Cma20g00754 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00351 Cma-Chr6:1629196 Cma20g00754 Cma-Chr20:3535112 3.86E-114 dispersed
Cma17g00387 Cma-Chr17:2167340 Cma20g00754 Cma-Chr20:3535112 4.12E-31 dispersed
Cma20g00754 Cma-Chr20:3535112 Cma12g00210 Cma-Chr12:1009922 1.59E-33 dispersed
Cma20g00754 Cma-Chr20:3535112 Cma02g00257 Cma-Chr2:1147855 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00754 Cma_Chr20 FPKM 22.64971 24.126499 19.309916 19.433031 15.190537 16.078394 16.656784 17.298502 14.55195 16.531481