Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00758 ATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAACTCGTTTATGGAGATGAAATGGAAGAAGGTGCATAGGTATATTGTGTTTAAGATCGATGAAGGATCGAGGTTGGTCACCGTTGACAAGGTCGGTGGTCCGGCCGAAAGCTACGATGATCTAACTGCCTCATTGCCGAATGACGACTGTCGATATGCAGTGTTCGATTTCGACTTCGTCACCGTTGATAACTGCCGGAAGAGCAAGATCTTCTTCATCGCGTCGCCCACCGCATCAAGAATTAGAGCAAAGATTCTATACGCAACTTCGAAAGCCGGGCTGAGGAGAGTGCTGGAAGGCATTCATTACGAGGTTCAAGCAACCGATCCAACTGAAATGGGGATGGATGTGATCAAGGACAGAGCCAAATAG 429 48.48 MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIASPTASRIRAKILYATSKAGLRRVLEGIHYEVQATDPTEMGMDVIKDRAK 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3574413 3575892 - CmaCh20G007580.1 Cma20g00758 316572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00758 142 SMART adf_2 16 142 IPR002108 GO:0003779
Cma20g00758 142 CDD ADF_cofilin_like 10 141 IPR017904 GO:0015629|GO:0030042
Cma20g00758 142 PANTHER ACTIN DEPOLYMERIZING FACTOR 5-RELATED 5 142 - -
Cma20g00758 142 PANTHER COFILIN-RELATED 5 142 IPR017904 GO:0015629|GO:0030042
Cma20g00758 142 SUPERFAMILY Actin depolymerizing proteins 6 140 - -
Cma20g00758 142 ProSiteProfiles ADF-H domain profile. 11 142 IPR002108 GO:0003779
Cma20g00758 142 Pfam Cofilin/tropomyosin-type actin-binding protein 18 139 IPR002108 GO:0003779
Cma20g00758 142 Gene3D Severin 2 142 IPR029006 -
Cma20g00758 142 PRINTS Cofilin/destrin family signature 89 110 IPR017904 GO:0015629|GO:0030042
Cma20g00758 142 PRINTS Cofilin/destrin family signature 111 127 IPR017904 GO:0015629|GO:0030042
Cma20g00758 142 PRINTS Cofilin/destrin family signature 68 88 IPR017904 GO:0015629|GO:0030042
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00758 K05765 CFL; cofilin - csv:101217451 279.641
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00246 Cma20g00758 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00758 Cma-Chr20:3574413 Cma03g00439 Cma-Chr3:4594431 1.72E-60 dispersed
Cma02g00246 Cma-Chr2:1100393 Cma20g00758 Cma-Chr20:3574413 3.76E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g144 . . . . . . . . . . Cma02g00246 Cma20g00758 . Car20g00659 . . . . . . . . . . . . . . . . . Cone12ag1226 . . . Lsi10g00487 . . . . . . . . . . . Sed01g0206 Cmo02g00247 Cmo20g00754 . . . . . . Bhi10g01861 Tan05g1152 Cmetu11g1192 . Hepe08g0285 . . Cla02g01159 Cam02g1235 Cec02g1244 Cco02g1284 Clacu02g1216 Cmu02g1185 Cre02g1496 . Csa02g01382 . Cme11g00388
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009905 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00758 Cma_Chr20 FPKM 15.969624 13.676023 21.210655 22.724026 8.353682 11.648655 9.288201 5.087399 5.152339 6.064389