Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00760 ATGGAGTCTGAGAAGAGGCCAGAAGATGTTGTGACTGTTGATGTTCAAGTTGCCAAAGATCTGTTGCAGAAGGGGCAGCTTTATTTGGATGTCAGGACAGTTGAAGAGTATAACAAGGGCCATGTTGAGAATGCACTCAATGTTCCTTACATGTTCTTGACCCCAGAAGGTCGAGTAAAGAATCCTGACTTTCTAGCACAAGTTACATCTATATTGAAGAAGGAAGATCATGTAGTAGTGGCTTGCAACAGTGGTGGTAGAGGACATCGCGCTTGCATCGATCTTCGTAACGCGGGGTATGAGCATGTGAAGAACATGGGAGGAGGGTACTCTGCTTGGGTTGACAGTGGATTTGCTGGAGACAAACCAGCTGAAGAGCTCAAAATAGCTTGTAAGTTCCGAGGTTGA 408 45.59 MESEKRPEDVVTVDVQVAKDLLQKGQLYLDVRTVEEYNKGHVENALNVPYMFLTPEGRVKNPDFLAQVTSILKKEDHVVVACNSGGRGHRACIDLRNAGYEHVKNMGGGYSAWVDSGFAGDKPAEELKIACKFRG 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3584342 3587351 + CmaCh20G007600.1 Cma20g00760 316574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00760 135 PANTHER THIOSULFATE SULFURTRANSFERASE 18 6 133 IPR044684 GO:0003824
Cma20g00760 135 Pfam Rhodanese-like domain 18 114 IPR001763 -
Cma20g00760 135 SMART rhod_4 13 119 IPR001763 -
Cma20g00760 135 ProSiteProfiles Rhodanese domain profile. 22 122 IPR001763 -
Cma20g00760 135 PANTHER PROTEIN HIGH ARSENIC CONTENT 1, MITOCHONDRIAL-RELATED 6 133 - -
Cma20g00760 135 Gene3D - 2 119 IPR036873 -
Cma20g00760 135 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 9 118 IPR036873 -
Cma20g00760 135 CDD RHOD 16 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00760 K22547 HAC1; arsenate reductase [EC:1.20.4.1] - csv:101206068 228.794
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00760 Cma-Chr20:3584342 Cma03g00645 Cma-Chr3:5492847 4.92E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1128 . . . . . . . . . . . . . . . . Cpe10g00671 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo03g00703 . . Cma20g00760 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002828 1 2 0 0 1 1 3 2 2 1 1 1 1 2 1 2 2 2 3 1 2 2 2 1 3 3 1 4 2 3 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00760 Cma_Chr20 FPKM 167.336624 175.823959 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0