Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00763 ATGGCTTCCTCGTTCCGCCGTTTAACCGCTCTCATTTTCGTAACACTCCACTTACTCGCCATTTGCAGAGCCGCCACATTCACCTTCGTTAACCGGTGCGATTTCACCGTTTGGCCCGGCATTCTCGCCAATGCCGGCAACCCTACTCTTGGCACCACCGGTTTCGAACTCCCCAAGGACACTTACCGCTCCTTTCTCGCTCCGACTGGTTGGTCCGGTCGTTTCTGGGGCCGAACTACCTGTAACTTCGACGGATCTGGTTCTGGATCCTGCGTAACCGGCGACTGCGGTTCCGGTCAAGTCGAGTGCAATGGCGCTGGAGCTGCCCCGCCGGCCACTCTCGCTGAGTTCACTCTTGGAACTGGCGGGCAGGACTTTTACGATGTTAGTCTCGTTGATGGATATAATCTCCCTATGATTGTTGAAGGAACCGGCGGGTCCGGTCAGTGTGCTTCGACGGGTTGCTCCACGGATCTGAACCGTCAATGTCCGCCGGAGCTGAGAGTTGGGGAAGGAGACGCGTGTAAGAGCGCGTGTGAGGCGTTTGGGACTGCGGAGTATTGTTGTAGCGGCGCGTACGGTTCACCGAACTCTTGTAAGCCGTCGGTGTACTCGGAAATGTTCAAATCTGCTTGTCCAAGGTCGTATAGCTACGCCTATGACGATGCTACGAGCACATTCACTTGTACCGGCGCCGATTACACCATTACATTTTGCCCTTCATCTCCAAGCCAAAAATCATCAAGTTTTCCTACTCCAACAACACCTGATGCATCTCAAGAGTATGGATCTGAATCTGGGTTTGAGTCGGGGTCGGGGTCGGGGTCGGAGTATGGGATGGGGTATTCGGGAGCCTCTGGAACGGATATGTTAGGGAGAGGTGCGAGTTCAGGATCAGAGTTGGGGTCGGGGTCCGCGTCGGGATCTGGGGAAGCTATGCTAGCAGATGGGTCGTGGTTGGCTGGTTTGGCTATGGGAGACGCAGCTAAAACTGTCTCTCCTCCATCCATTATACTGTTTGTTGTAACGTTTATTGTTATCTTGTCTTCTGTATTCTTGTAG 1062 53.86 MASSFRRLTALIFVTLHLLAICRAATFTFVNRCDFTVWPGILANAGNPTLGTTGFELPKDTYRSFLAPTGWSGRFWGRTTCNFDGSGSGSCVTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGQCASTGCSTDLNRQCPPELRVGEGDACKSACEAFGTAEYCCSGAYGSPNSCKPSVYSEMFKSACPRSYSYAYDDATSTFTCTGADYTITFCPSSPSQKSSSFPTPTTPDASQEYGSESGFESGSGSGSEYGMGYSGASGTDMLGRGASSGSELGSGSASGSGEAMLADGSWLAGLAMGDAAKTVSPPSIILFVVTFIVILSSVFL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3600503 3602189 - CmaCh20G007630.1 Cma20g00763 316577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00763 353 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Cma20g00763 353 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Cma20g00763 353 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cma20g00763 353 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cma20g00763 353 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Cma20g00763 353 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Cma20g00763 353 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Cma20g00763 353 PANTHER OS03G0233200 PROTEIN 14 266 IPR001938 -
Cma20g00763 353 Pfam Thaumatin family 31 240 IPR001938 -
Cma20g00763 353 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 14 266 - -
Cma20g00763 353 MobiDBLite consensus disorder prediction 242 275 - -
Cma20g00763 353 Gene3D Thaumatin 25 240 IPR037176 -
Cma20g00763 353 SMART tha2 27 240 IPR001938 -
Cma20g00763 353 CDD TLP-PA 26 239 - -
Cma20g00763 353 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00763 - - - cmos:111448558 621.313
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma07g00422 Cma20g00763 CCT
Cma07g00422 Cma20g00763 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00422 Cma-Chr7:1812385 Cma20g00763 Cma-Chr20:3600503 9.77E-125 dispersed
Cma12g00403 Cma-Chr12:2089523 Cma20g00763 Cma-Chr20:3600503 4.13E-110 dispersed
Cma18g00070 Cma-Chr18:297974 Cma20g00763 Cma-Chr20:3600503 1.00E-85 dispersed
Cma20g00763 Cma-Chr20:3600503 Cma16g01240 Cma-Chr16:9373372 2.45E-96 dispersed
Cma20g00763 Cma-Chr20:3600503 Cma20g00764 Cma-Chr20:3604467 1.47E-92 tandem
Cma20g00763 Cma-Chr20:3600503 Cma05g00312 Cma-Chr5:1353680 3.75E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g139 . Blo15g00372 . . . . . . . . . Cma20g00763 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00480 . Chy11g00274 . . . . . . . . . Sed05g3597 . Cmo20g00760 . . . . Cpe16g00307 . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . Cla02g01153 Cam02g1229 Cec02g1238 Cco02g1278 Clacu02g1210 Cmu02g1179 Cre02g1488 . Csa02g01374 . Cme11g00395
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00763 Cma_Chr20 FPKM 11.104728 11.211265 17.743975 20.572466 72.656609 65.448067 65.645172 0.207733 0.088024 0.13911