Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00764 ATGCTAAGGGATGTGTATTTCTCTCGCAACAAGGAAGGTAAAGTTCTTCCAATCCCATCAAAACCCCAATCTTATCTCTTTTCCTTCAATCTTCCGATGGATCGCTCACTCCTCCTCGCCACTCTTTTCACTCTTCTTCTTCTCCCAGATGTTCAATCGACGTCTTTTAAGTTAATCAACAAGTGTCGGACCACGATTTGGCCGGGTCTGTTATCAGGCGCCAACACCCCCCAGCTTCCGACCACCGGCTTCGCCCTCCGCAGCGGCAAATCCAAGATCGTTCCGGTCCCGAAATCTTGGTCCGGTCGGTTATGGGCTCGGACCCTTTGTGGATTAGATTCAGATGGGAAGTTCTCTTGCCTCACCGGCGATTGTGGGTCGGGTAAAGTGGAGTGCGATGGCGGCGGCGCTAAACCACCGGCCACCTTGGCGGAGTTTACTCTCAACGGCGCCGATGGGCTTGATTTTTACGACGTCAGCTTGGTCGACGGTTATAATCTTCCGATGCTGGTTGTGGCCAAAGGTGGAACCAGAGGCGGTTGCGCTGCTACCGGCTGTTTGGTGGATTTGAACGGCGCGTGTCCATCGGAGCTTCGAGTAGCGCGTGGTGGTGGTCGTGGTGGAAGTAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTTAATGCTCCGCAATTTTGTTGCAGTGAGGCGTTCTCTACGCCTGACACGTGTCGTCCTTCTGTATATTCGGAGTTCTTCAAACATGCTTGCCCACGCTCTTATAGCTACGCGTATGATGACAAAACCAGCACTTTCACGTGCGCATCCGCCGACTACCTTATCATATTTTGTCCACTACCCTACACCAGTCAGAAAGTATTGAGTGCAAGGAAAGACGGGGCAGCGTTACCGCTCGTGAACAAGACCATGATGTACTTGAGAAGCCGAAGATCGATCAGTGTTCGATCGGCAGCCTTCCCTGTAAGTTTCAGGCTTATAGTCTCGAAACGAGGTGTCGAGGGACGGAGAGGGGAGTTCGAGACGGGCGTATCGGCGACGATAGGGGAGACAGCATACTCAAAAAATGGAAGGCTTTTTTGTTTATACACAGTTGAAGTTGATTGA 1104 51.9 MLRDVYFSRNKEGKVLPIPSKPQSYLFSFNLPMDRSLLLATLFTLLLLPDVQSTSFKLINKCRTTIWPGLLSGANTPQLPTTGFALRSGKSKIVPVPKSWSGRLWARTLCGLDSDGKFSCLTGDCGSGKVECDGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLVVAKGGTRGGCAATGCLVDLNGACPSELRVARGGGRGGSSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEFFKHACPRSYSYAYDDKTSTFTCASADYLIIFCPLPYTSQKVLSARKDGAALPLVNKTMMYLRSRRSISVRSAAFPVSFRLIVSKRGVEGRRGEFETGVSATIGETAYSKNGRLFCLYTVEVD 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3604467 3606270 - CmaCh20G007640.1 Cma20g00764 316578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00764 367 CDD TLP-PA 55 277 - -
Cma20g00764 367 Pfam Thaumatin family 60 278 IPR001938 -
Cma20g00764 367 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 37 289 - -
Cma20g00764 367 SUPERFAMILY Osmotin, thaumatin-like protein 55 278 IPR037176 -
Cma20g00764 367 ProSitePatterns Thaumatin family signature. 116 132 IPR017949 -
Cma20g00764 367 Gene3D Thaumatin 54 278 IPR037176 -
Cma20g00764 367 ProSiteProfiles Thaumatin family profile. 53 278 IPR001938 -
Cma20g00764 367 PANTHER OS03G0233200 PROTEIN 37 289 IPR001938 -
Cma20g00764 367 PRINTS Pathogenesis-related protein signature 155 171 IPR001938 -
Cma20g00764 367 PRINTS Pathogenesis-related protein signature 268 277 IPR001938 -
Cma20g00764 367 PRINTS Pathogenesis-related protein signature 55 67 IPR001938 -
Cma20g00764 367 PRINTS Pathogenesis-related protein signature 103 114 IPR001938 -
Cma20g00764 367 SMART tha2 56 278 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00764 - - - csv:101216503 505.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00680 Cma20g00764 CCT
Cma07g00423 Cma20g00764 CCT
Cma03g00680 Cma20g00764 ECH
Cma07g00423 Cma20g00764 ECH
Cma16g01240 Cma20g00764 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01978 Cma-Chr1:12735370 Cma20g00764 Cma-Chr20:3604467 7.71E-110 dispersed
Cma12g00404 Cma-Chr12:2094081 Cma20g00764 Cma-Chr20:3604467 2.98E-109 dispersed
Cma16g01240 Cma-Chr16:9373372 Cma20g00764 Cma-Chr20:3604467 9.16E-96 dispersed
Cma20g00764 Cma-Chr20:3604467 Cma03g00680 Cma-Chr3:5628886 3.80E-99 dispersed
Cma20g00763 Cma-Chr20:3600503 Cma20g00764 Cma-Chr20:3604467 1.47E-92 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g138 Blo02g00698 . Bda06g00483 . . . . . . . . Cma20g00764 . Car20g00665 . . . . . . . . . . . . . . . . . . . . Cone10ag1178 Lsi10g00478 . Chy11g00276 . . . . . . . . . Sed05g3598 . Cmo20g00761 . . . . Cpe16g00306 . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . Cla02g01152 Cam02g1228 Cec02g1236 Cco02g1277 Clacu02g1209 Cmu02g1178 Cre02g1487 . Csa02g01372 . Cme11g00396
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00764 Cma_Chr20 FPKM 10.067637 13.993013 16.129562 17.452738 13.401128 13.129507 11.105287 14.605387 19.367464 17.140045