Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00770 ATGGCGGTGGTGTCTACTTCTCTCGCATCTCAGCTCTCAGCTATCAGATTGTCCACTTCCAAGTCCGACATTTCTCAGACTCTGTTTCAGAACGTCCACTCACAAATCCGCCTTGCATCCTCCCGGAAAGGTTCCCGTGGTGTTGTCACCATGGCCGGTTCCGGCAAGTTCTTCGTTGGTGGAAACTGGAAATGTAATGGTACAAAGGAATCAATAACCAAGCTTGTCTCAGATTTGAACAATGTAAAGTTGGAGGATGATGTTGATGTTGTTGTAGCACCTCCATTTCTGTACATTGATCAGGTGAAGAGCTCATTGGCACCTAGGATTGAGATTTCTGCCCAAAACTCATGGGTGAGCAAGGGTGGCGCTTTTACAGGAGAAATCAGCGTTGAACAATTGAAAGATATAGGCTGCAAGTGGGTTATCCTTGGGCACTCTGAACGGAGACATGTCATTGGTGAAGATGACCAGTTTATAGGAAAGAAGGCTGCCTATGCCTTGAGCGAGGATGCTGTTCCAAGTTGGGATGGTATCGTTATCGCATATGAGCCAGTATGGGCCATTGGGACTGGCAAAGTGGCTACTCCCGACCAAGCACAGGAAGTGCATGCAGCAGTTCGCGATTGGCTTAAGAAGAATGTATCACCAGAAGTGGCTTCTAAAACACGGATTATTTATGGAGGATCTGTGAATGGAGGTAATTGTGCTGAGCTTGCTAAAAAAGAGGATATAGATGGATTTCTAGTGGGAGGTGCTTCATTGAAGGGTCCTGAATTCGGAACAATCGTTAATTCCGTTACTGCCAAGAAAAATTAA 819 45.91 MAVVSTSLASQLSAIRLSTSKSDISQTLFQNVHSQIRLASSRKGSRGVVTMAGSGKFFVGGNWKCNGTKESITKLVSDLNNVKLEDDVDVVVAPPFLYIDQVKSSLAPRIEISAQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSERRHVIGEDDQFIGKKAAYALSEDAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAVRDWLKKNVSPEVASKTRIIYGGSVNGGNCAELAKKEDIDGFLVGGASLKGPEFGTIVNSVTAKKN 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3644974 3651783 + CmaCh20G007700.1 Cma20g00770 316584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00770 272 PANTHER TRIOSEPHOSPHATE ISOMERASE 171 271 IPR000652 GO:0004807
Cma20g00770 272 Gene3D Aldolase class I 172 271 IPR013785 -
Cma20g00770 272 Gene3D Aldolase class I 33 171 IPR013785 -
Cma20g00770 272 CDD TIM 57 265 IPR000652 GO:0004807
Cma20g00770 272 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 56 266 IPR000652 GO:0004807
Cma20g00770 272 Pfam Triosephosphate isomerase 176 266 IPR000652 GO:0004807
Cma20g00770 272 Pfam Triosephosphate isomerase 58 173 IPR000652 GO:0004807
Cma20g00770 272 PANTHER TRIOSEPHOSPHATE ISOMERASE 4 170 IPR000652 GO:0004807
Cma20g00770 272 Hamap Triosephosphate isomerase [tpiA]. 55 266 IPR022896 GO:0004807|GO:0006096
Cma20g00770 272 SUPERFAMILY Triosephosphate isomerase (TIM) 53 266 IPR035990 GO:0004807
Cma20g00770 272 ProSitePatterns Triosephosphate isomerase active site. 182 192 IPR020861 GO:0004807
Cma20g00770 272 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 4 170 - -
Cma20g00770 272 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 171 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00770 K01803 TPI, tpiA; triosephosphate isomerase (TIM) [EC:5.3.1.1] - csv:101213372 480.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00330 Cma20g00770 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00801 Cma-Chr2:4749146 Cma20g00770 Cma-Chr20:3644974 9.52E-84 dispersed
Cma20g00401 Cma-Chr20:1924705 Cma20g00770 Cma-Chr20:3644974 9.27E-59 dispersed
Cma02g00330 Cma-Chr2:1622263 Cma20g00770 Cma-Chr20:3644974 1.63E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g110 . . . Bda08g01041 . . Bma05g00412 . . . Cma02g00330 Cma20g00770 Car02g00210 Car20g00673 . . . . . . . . . . . . . . . . . . . . Cone10ag1184 Lsi10g00462 . Chy11g00296 . . . . . . . . . . Cmo02g00325 Cmo20g00770 . . . . Cpe16g00296 . Bhi10g01892 . . . Hepe08g0946 . . Cla02g01114 Cam02g1187 . . Clacu02g1177 Cmu02g1137 . . Csa02g01353 . Cme11g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008639 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00770 Cma_Chr20 FPKM 52.061893 55.36311 114.054016 109.729324 211.240875 204.181381 209.472275 111.493866 113.546127 111.879234