Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00773 ATGCCATCAATGGCGGCCACTGGACCTGCCGAGGAGGAGGGGCTTGCTTTGCCGGCTGGCGACGGAGGAAGCTCTGGTGGAGATCACGCCTCCTTTCTCTCCACCTTTCTTCTTTACATTGGTGCCCACGAGCTTTTCTCGCCACAGATGTGGAAAGCGGCCATGACAGAGTTGGTAGCAACAGCCTTGCTGGTATTTTGCTTAACAACTTCCATCGTCTCGTGCTTGAAATCCAACGAATCAGATCCAAAGCTCTTAATCCCAATCGCCGTTTTCATCATCCTCTTCCTCTTCCTCCTCGTCACTTTCCCTCTCTCCGGCGGTTTCATGAGCCCCATTTTCGCCTTCATCGCCGCCCTAAGAGGCGTCATAACCTTCACTCGCGCCGCCGTCTACATTCTCGCTCAATGTCTCGGCTCCATCATTGCCTTTCTCCTAATCAAGGACGCAATGAGCCCCGATGTTGCCGACAAGTACTCTCTCGGCGGCTGCACCATCCATGGCACCGGCGACACCCCTGGCATCGGTATCGCCACGGCTCTAGTTCTCGAATTCGCCTGCACCTTCGTGGTTCTCTATGTCGGAGTGACGGTGGTGCTCGACCAGAAGATGAGCGAGCGGCTCGGTCTGCCGATGGTGTGCGGAATGATCGCGGGGAGTTCGGCGGTGGCGGTTTTCGTGTCGACGACGATTACAGGGCGGGCTGGGTACGGTGGGGTGGGGCTGAATCCGGCGAGGTGTTTAGGGCCGGCGGTGTTGAGAGGAGGACGGTTGTGGGAGGGGCATTGGGTGTTTTGGGTGGGGCCGTTTGCGGCGTGTGTGGCTTATTATGGATTTTCGGTCAATTTGCCGACGGCGCCGTTGGTTGGAGCGAAGGGGGATATCGGGATTTTGAAAATGGCCGGCAGTTGTTGGCGGTGGCGCCGCCGCCGGAGGTTGGAAGAAAAGTTAGGGCAAAATGTTTAA 966 57.14 MPSMAATGPAEEEGLALPAGDGGSSGGDHASFLSTFLLYIGAHELFSPQMWKAAMTELVATALLVFCLTTSIVSCLKSNESDPKLLIPIAVFIILFLFLLVTFPLSGGFMSPIFAFIAALRGVITFTRAAVYILAQCLGSIIAFLLIKDAMSPDVADKYSLGGCTIHGTGDTPGIGIATALVLEFACTFVVLYVGVTVVLDQKMSERLGLPMVCGMIAGSSAVAVFVSTTITGRAGYGGVGLNPARCLGPAVLRGGRLWEGHWVFWVGPFAACVAYYGFSVNLPTAPLVGAKGDIGILKMAGSCWRWRRRRRLEEKLGQNV 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3659244 3661371 + CmaCh20G007730.1 Cma20g00773 316587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00773 321 Gene3D Glycerol uptake facilitator protein. 38 284 IPR023271 -
Cma20g00773 321 Pfam Major intrinsic protein 46 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00773 321 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00773 321 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00773 321 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00773 321 PRINTS Major intrinsic protein family signature 183 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00773 321 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00773 321 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma20g00773 321 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 30 307 - -
Cma20g00773 321 SUPERFAMILY Aquaporin-like 50 275 IPR023271 -
Cma20g00773 321 PANTHER AQUAPORIN-LIKE 30 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00773 K09866 AQP4; aquaporin-4 - csv:101208503 437.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00773 Cma-Chr20:3659244 Cma04g01127 Cma-Chr4:5823126 4.07E-21 dispersed
Cma20g00773 Cma-Chr20:3659244 Cma04g00163 Cma-Chr4:804572 2.67E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g88 . Blo15g00657 . . . . . . . . . Cma20g00773 . Car20g00676 . . . . . . . . . . . . . . . . . . Cone8ag1256 . Cone10ag1186 Lsi10g00459 . Chy11g00301 . . . . . . . . . Sed01g0227 . . . . . . . . Bhi10g01899 Tan05g1199 Cmetu11g1981 . Hepe08g0951 . . Cla02g01120 Cam02g1193 Cec02g1182 . Clacu02g1182 Cmu02g1142 . . Csa02g01348 . Cme11g00423
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010832 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00773 Cma_Chr20 FPKM 1.962107 2.204658 0.0 0.0 0.583137 0.41943 0.725804 0.0 0.0 0.0