Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00786 ATGGGAATTCGTCTACCTTCTCTTCTCTTTAGTGCCAAACAAATTCTGAAGACACAGTCAGTATCTGTACAAGGTCAATCCAACGTACCCAAAGGTCACATTGCAGTATACGTGGGAGAAATTCAGAGGAAGCGGTTTTTGGTTCCAATATCTTACTTGAACCATCCTTCATTTGTAAATTTGCTCAGTAGGGCTGAAGAAGAGTTTGGATTCAACCATCCAACAGGAGGTTTGACCATTCCCTGCAATGAAGAAGCCTTCATAGATGTCACCTCCAGACTATCTTTCTCTATCTTTCATCTCAAACAAATGGGGATTGGATTGCTATCTTTAATTCCTCGTGCCAAGCAAATCTTGAAGATGCAGCCAGGTTTTACCAAAAACCAGCTGGATGTTCCAAAAGGCCATGTGGCCGTTTATGTGGGAGAGATTCAAATGAAGCGGTTTGTGGTTCCAATATCTTACTTAAACCAACCATTGTTCCAGCAACTACTCAGGCACGCAGAGGAGGAATTTGGCTTCCATCATCCACAAGGGAGCCTGACAATTCCTTGCAAAGAAGATGCCTTCATCGAACTCACTTCTAGATTGCAAGCATTTTGA 603 42.62 MGIRLPSLLFSAKQILKTQSVSVQGQSNVPKGHIAVYVGEIQRKRFLVPISYLNHPSFVNLLSRAEEEFGFNHPTGGLTIPCNEEAFIDVTSRLSFSIFHLKQMGIGLLSLIPRAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQMKRFVVPISYLNQPLFQQLLRHAEEEFGFHHPQGSLTIPCKEDAFIELTSRLQAF 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3707113 3709247 - CmaCh20G007860.1 Cma20g00786 316600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00786 200 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 104 198 IPR003676 GO:0009733
Cma20g00786 200 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 95 IPR003676 GO:0009733
Cma20g00786 200 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 1 95 - -
Cma20g00786 200 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 104 198 - -
Cma20g00786 200 Pfam Auxin responsive protein 13 93 IPR003676 GO:0009733
Cma20g00786 200 Pfam Auxin responsive protein 116 196 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00786 - - K14488 vri:117913455 246.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00340 Cma-Chr2:1674236 Cma20g00786 Cma-Chr20:3707113 1.84E-93 dispersed
Cma20g00779 Cma-Chr20:3689053 Cma20g00786 Cma-Chr20:3707113 9.51E-39 dispersed
Cma20g00781 Cma-Chr20:3694490 Cma20g00786 Cma-Chr20:3707113 2.55E-41 dispersed
Cma20g00782 Cma-Chr20:3696959 Cma20g00786 Cma-Chr20:3707113 1.64E-45 dispersed
Cma20g00783 Cma-Chr20:3698263 Cma20g00786 Cma-Chr20:3707113 1.64E-45 dispersed
Cma20g00793 Cma-Chr20:3727585 Cma20g00786 Cma-Chr20:3707113 1.07E-39 dispersed
Cma20g00786 Cma-Chr20:3707113 Cma20g00788 Cma-Chr20:3712706 2.58E-34 proximal
Cma11g01410 Cma-Chr11:9264102 Cma20g00786 Cma-Chr20:3707113 1.08E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g70 . . . . . . . . . . . Cma20g00786 . . Sed05g2270 . . Bhi05g01766 Tan02g0734 Cmetu01g0016 . . . . Cla02g00469 Cam02g0476 Cec02g0477 . Clacu02g0480 Cmu02g0475 Cre02g0807 . . . . Lsi10g00441 . . Cme01g01309 . Blo13g00529 . Bda14g00592 . . . . Sed01g0246 . Cmo20g00805 . . . . . Cpe05g01302 Bhi10g01918 Tan05g1219 Cmetu11g1650 . . . . . . . . . . . Lsi11g01159 Csa02g01325 . Cme11g00436
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00786 Cma_Chr20 FPKM 0.0 0.0 0.730708 0.80077 0.278213 0.0 0.0 0.0 0.0 0.0