Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00797 ATGGGAGGAAGCAACAGGCAGGAGGAGGGGCATTTGACAGTCTTTTGGTTTTATAGTACAGGGATATTTGAGTTTAGGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAGCCGAGATTTGCTTTCATGACAAAGAGTGATATCGATCATCTCGACGATGGGTATCGGTGGCGAAAGTACGGTCAAAAAGCCGTGAAGAACAGTCCTTACCCTAGAAGCTATTACCGTTGTACTACGGTAGGGTGTGGTGTGAAGAAGAGAGTGGAGCGATTGTCCAACGACCAATCGACCGTCGTTACAACTTACGAAGGCCAACACACCCATCAAAGTCCGATAATTCCACGAGGTAGTATCAGAGTCCTACCGGAATCCAATCTCGACTTTGGGCTCAGGGCTGAGAGGGCATCAGTGTTCCATTTTGGTCCTGAACAGTGTCCTACAGAATCAGCCATTGGTCAATTTGAGGACCAGCAGAAGATTCGAAAGGGCTAG 498 47.19 MGGSNRQEEGHLTVFWFYSTGIFEFRLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERLSNDQSTVVTTYEGQHTHQSPIIPRGSIRVLPESNLDFGLRAERASVFHFGPEQCPTESAIGQFEDQQKIRKG 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3733279 3735697 - CmaCh20G007970.1 Cma20g00797 316611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00797 165 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 26 131 - -
Cma20g00797 165 Pfam WRKY DNA -binding domain 54 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g00797 165 Gene3D WRKY domain 40 106 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma20g00797 165 SUPERFAMILY WRKY DNA-binding domain 45 113 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma20g00797 165 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 131 IPR044810 GO:0003700
Cma20g00797 165 ProSiteProfiles WRKY domain profile. 48 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma20g00797 165 SMART WRKY_cls 53 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01571 Cma-Chr6:9833175 Cma20g00797 Cma-Chr20:3733279 8.39E-53 dispersed
Cma08g01289 Cma-Chr8:7800804 Cma20g00797 Cma-Chr20:3733279 6.52E-49 dispersed
Cma20g00797 Cma-Chr20:3733279 Cma01g00279 Cma-Chr1:1325486 4.45E-43 dispersed
Cma20g00797 Cma-Chr20:3733279 Cma14g01581 Cma-Chr14:11876011 1.43E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37031 PF03106 WRKY 7.70E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00797 - - cmos:111457825 204.142