Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00798 ATGTCGAGCCCTCACCATTTTCATATTAGACGAAGTCTCGATTCCTTCGCCAGTTTTTTGCGCCATTCTCCTCAAATCCAAAATCTCAAAGCCATTAAGAAGCTTCACGCCCAACTGCTTAGAACCCACTTCCAATTTTCCTCCCCAGATCTTCACTCTAAGCTTATACTATCCTACTCCCAAACCATCCCCAATTTTGATGCGCAAAGCTTAAGCAGCTTCTTCAAATGCATAATCCCCAGAAGTTCTTTAACCTTTAACGTAATGATTTCTGACTTTTATCGACATGGGTTTCCAGATTTTTCGTTAATGGCGTTGTCTTTCATGCATTCCAATGGGGTTCCTATCGATACGTATGCCCTTTGCAGCTCTTTGAGTGCTTGTTCTCTTGTTCAGAATGTGGTGTATGGAAAACAGATGCACGCCTTCGTGGGGAAATCAGGTTGGTTATGTAGTGTTTTTGTGGGGAGTGCGATTGTCGACATGTATGCAAAAAATTCGCTGATTAATGATGCAGTTAAAGTGTTCGATGAAATTCCTGTGAAGAATACGGTGTGCGCAAATGCATTATTGGCTGGATATGGCGACGCTAGCATGTGGTTTGATGGACTTGAATTGCTACGGAAGATGCACGTTTTGGATTTGAAGTATGACCGGTTCACTCTATCAGCTTCTTTACGTGCGTGCACTGGTTTATCTGCAATTGCTTTAGGTAAGCAAGTGCATGCTTATCTACTACGAACGGTTTATGATATTTCGAGTGATGTTCATCTTCAAAGCACATTAATTGAAATGTATGGGAAGAGTGGCATGGTGGAAAAAGCATGGAATGTGTTCGTTTTCGCAGGACTTGGACAAAAAGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGCATATGGTAGAAACGGATGTTACATAAGAGTAATTGAATTGTACAACCAGATGTTGATGGAAGGGATCAAACCAGATAGGGTGGCTTTTGTGACAGTGATATCAGCTTGTGGTCACACTGGTCAGGTGAATCTTGGAGTCAAATATTTTGACTCCATGCAGAGTGTTTTTGGGTTGGAACCTGGTCAAGAGCACTATAGTTGTTTGGTTGACTTGCTCTGTAGATCTGGGGAATTGGAAAAAGCATGGAAGCTTGTAAGTGGTATGAAAAGTAGCGATTACAATGTACCTCTATGGGGTGCTTTACTCCGAGCTTGCTTGGAACATGGAAATATTAAGTTGGGTAATTTGGCAGCTCGTAGGGCACTTGAATTGGATCCTACGAACGCTGGGATATTCGTTATGCTATCAAATCTGTATTCTGGTTTTGGCTTGTGGAATGAGATAGAGCATTTGAGGGAATTTGTGAGAAGGGAAGGGCTGCATAAAGGTGTTGGATGTAGCTGGATAGAGACCACAAGTTGA 1431 41.93 MSSPHHFHIRRSLDSFASFLRHSPQIQNLKAIKKLHAQLLRTHFQFSSPDLHSKLILSYSQTIPNFDAQSLSSFFKCIIPRSSLTFNVMISDFYRHGFPDFSLMALSFMHSNGVPIDTYALCSSLSACSLVQNVVYGKQMHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASMWFDGLELLRKMHVLDLKYDRFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISSDVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDLLCRSGELEKAWKLVSGMKSSDYNVPLWGALLRACLEHGNIKLGNLAARRALELDPTNAGIFVMLSNLYSGFGLWNEIEHLREFVRREGLHKGVGCSWIETTS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3735705 3737135 + CmaCh20G007980.1 Cma20g00798 316612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00798 476 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Cma20g00798 476 TIGRFAM PPR: pentatricopeptide repeat domain 331 363 IPR002885 -
Cma20g00798 476 TIGRFAM PPR: pentatricopeptide repeat domain 368 395 IPR002885 -
Cma20g00798 476 Pfam PPR repeat family 293 339 IPR002885 -
Cma20g00798 476 Pfam PPR repeat 360 392 IPR002885 -
Cma20g00798 476 Pfam PPR repeat 158 180 IPR002885 -
Cma20g00798 476 Pfam PPR repeat 186 211 IPR002885 -
Cma20g00798 476 Pfam PPR repeat 260 279 IPR002885 -
Cma20g00798 476 Pfam PPR repeat 85 114 IPR002885 -
Cma20g00798 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Cma20g00798 476 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 29 472 - -
Cma20g00798 476 Pfam E motif 411 473 IPR046848 -
Cma20g00798 476 Gene3D Tetratricopeptide repeat domain 258 475 IPR011990 GO:0005515
Cma20g00798 476 Gene3D Tetratricopeptide repeat domain 82 257 IPR011990 GO:0005515
Cma20g00798 476 PANTHER OS02G0126500 PROTEIN 29 472 - -
Cma20g00798 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00798 - - - cpep:111777029 917.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00798 Cma-Chr20:3735705 Cma15g00529 Cma-Chr15:2449424 1.19E-22 dispersed
Cma20g00798 Cma-Chr20:3735705 Cma05g00284 Cma-Chr5:1213510 3.92E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g68 . . . . . . . . . . . Cma20g00798 . Car20g00683 . . . . . . . . . . . . . . . . . . . . . Lsi10g00430 . Chy11g00322 . . . . . . . . . . . Cmo20g00806 . . . . Cpe16g00285 . Bhi10g01925 . . . . . . . . . . . . . . Csa02g01323 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009137 1 6 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00798 Cma_Chr20 FPKM 0.300489 0.524359 0.443508 0.265834 0.870777 0.596585 0.670035 0.348146 0.507476 0.178222