Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00804 ATGCCGGCCCTAGCTTATTGCGTGGATGCTACTGCAGCTCCTCCTCCTGGCTACGCTTTTGCTGGGGATAGCTCTCTTCCGTCGCCGGACTTATTTCCCGGCGGACCTCCGGAGACTACCATCTTCACCTCTCCCGTCTCTGCTCCCACCTCTGAAAATCTGTCTTGGTCTCCTTCTCTTTCTTCTTCCCTTTACAAGATCGATGGATGGGGTGCCCCTTATTTTTCTGTTAATGGCTCTGGAAATATGGCTGTTCGTCCTTACGGTACGGCCACTTTGCCGCATCAGGAGATTGATTTGCTCAAAATTGTGAAGAAGGCTTCAGATCCGATTCGATCTGGCGGCCTCGGGTTACAGCTTCCTCTTATTGTGCGCTTTCCTGATGTGCTTAAGAATCGTCTTGAATCTCTCCAGTCGGCATTTGATCATGCCATTCAATCTCAGGGATATGGTTCTCATTACCAGGGTGTTTTCCCGGTTAAATGCAACCAGGACAGGTTCGTTGTTGAGGACATAGTGAAATTCGGATCTCCTTTCCGTTTTGGTCTCGAAGCTGGCTCGAAACCAGAGATCCTCCTAGCAATGAGCTGTTTGTGCAAAGGGAATTCAGATGCCCTTTTGGTGTGTAATGGTTTCAAGGATGCGGAGTACATTTCTTTGGCTCTTATTGCCAGGAAGCTTGCTTTGAACACGGTGGTTGTTCTCGAACAAGAGGAAGAGCTCGATTTAGTGATTGATTTGAGCAAAAGACTCTTCGTTCGCCCTGTGGTTGGCGTGCGTGCGAAGCTTCGAACCAAACATTCTGGTCATTTTGGGTCTACGTCTGGCGAGAAAGGGAAATTTGGACTTACGACCACCCAGATTCTTCGGGTGGTCGGGAAACTTAAACAGCATGATATGCTTGATTGCCTTCAATTGCTACATTTTCACATTGGATCCCAGATTCCTTCCACTACCTTGCTCGCCGATGGCGTTGGTGAGGCTGCTCAGATCTATTGTGAATTGGTCCGTCTCGGTGCCAACATGCGTGTAGTTGACATTGGAGGTGGTCTGGGTATTGACTATGACGGTTCGAAGTCTCCGGACTCTGGGTTATCTGTTGCATATGGTCTCGATGAGTATGCCTCTATGGTTGTTGACGTAATTCGCTCTGTATGTGACCGTAGGTCCGTGAAGCACCCAATACTTTGCAGTGAAAGTGGTCGAGCAATTGCCTCTCATCACTCCGTTCTGATTTTCGAGGCCGTTTCTGCTAGTACTTATGAGGTCCCATCCATGAGCTCCATTGAACTTCAGTATCTTGATGGGCTAACAGACGATGCCCGCGTAGATTATCAGAACCTTTCGGCTGCTGCTTGTATGGGTGAGTATAAGACATGCTTGCTGTATGCGGACCAATTGAAACAACGCTGCATTGAGAAATTCATGGATGGGTGTTTGGGAATGGAACAACTGGCTGCTGTGGATGGCCTTTGTGCTCTCATTTCGAAGGCTGTTGGGGAGTTGGACTCTGTAAGATCTTATCACGTGAACCTCTCTATTTTCACTTCCATTCCAGATTTCTGGGGTATCGATCAGCTGTTCCCTATAGTCCCCATTCATCGTCTTGATCAGAGACCTTCAGTGAGAGGCATTCTCTCTGATCTTACCTGTGACAGTGACGGGAAGATCGATAAGTTCATTGGTGGCGAGTCAAGTTTGCCATTGCACGAGATGGAAGGCAATGGTAATTTGTCAGGTGGAGGTGGGCGATACTATCTTGGGATGTTTCTGGGCGGGGCTTATGAGGAGGCTCTCGGTGGTGTTCACAACCTGTTTGGTGGCCCGAGCGTAATTCGAGTAATGCAGAGCGATGGACCGCATAGCTTTGCGGTGACTCGCACTGTGCCTGGGCCATCATCCGGGGACATCCTCCGAGTGATGCAGTACGAGCCCGAACTCATGTTCGAGACGCTCAAGCACCGAGCAGAGGAGTTTGTGCAGGAAGATGATGATGGTTGTGAGGGCATAGCCAACAGCTTGGCCATGTCCTTCCGCAACATGCCTTATTTGGGTAGCCCATCTTCCTGTTTCAGTGATAGTGATACTGATTACAATGGTGCTGTGGATTCTGGTTCTGGCGATGATTCCGAGCAGTGGACTTACTGCTATGCTTGA 2157 49.19 MPALAYCVDATAAPPPGYAFAGDSSLPSPDLFPGGPPETTIFTSPVSAPTSENLSWSPSLSSSLYKIDGWGAPYFSVNGSGNMAVRPYGTATLPHQEIDLLKIVKKASDPIRSGGLGLQLPLIVRFPDVLKNRLESLQSAFDHAIQSQGYGSHYQGVFPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPEILLAMSCLCKGNSDALLVCNGFKDAEYISLALIARKLALNTVVVLEQEEELDLVIDLSKRLFVRPVVGVRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVGKLKQHDMLDCLQLLHFHIGSQIPSTTLLADGVGEAAQIYCELVRLGANMRVVDIGGGLGIDYDGSKSPDSGLSVAYGLDEYASMVVDVIRSVCDRRSVKHPILCSESGRAIASHHSVLIFEAVSASTYEVPSMSSIELQYLDGLTDDARVDYQNLSAAACMGEYKTCLLYADQLKQRCIEKFMDGCLGMEQLAAVDGLCALISKAVGELDSVRSYHVNLSIFTSIPDFWGIDQLFPIVPIHRLDQRPSVRGILSDLTCDSDGKIDKFIGGESSLPLHEMEGNGNLSGGGGRYYLGMFLGGAYEEALGGVHNLFGGPSVIRVMQSDGPHSFAVTRTVPGPSSGDILRVMQYEPELMFETLKHRAEEFVQEDDDGCEGIANSLAMSFRNMPYLGSPSSCFSDSDTDYNGAVDSGSGDDSEQWTYCYA 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3785981 3788137 + CmaCh20G008040.1 Cma20g00804 316618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00804 718 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 65 616 IPR009006 GO:0003824
Cma20g00804 718 PIRSF ARGDC 43 686 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 Gene3D - 425 504 - -
Cma20g00804 718 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 149 405 IPR022644 GO:0003824
Cma20g00804 718 PANTHER ARGININE DECARBOXYLASE 1 697 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 158 176 IPR000183 GO:0003824
Cma20g00804 718 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 194 IPR000183 GO:0003824
Cma20g00804 718 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 301 314 IPR000183 GO:0003824
Cma20g00804 718 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 396 415 IPR000183 GO:0003824
Cma20g00804 718 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 593 606 IPR000183 GO:0003824
Cma20g00804 718 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 339 352 IPR022657 -
Cma20g00804 718 Gene3D Alanine racemase 127 408 IPR029066 -
Cma20g00804 718 PRINTS Arginine decarboxylase signature 126 141 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Arginine decarboxylase signature 150 164 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Arginine decarboxylase signature 208 223 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Arginine decarboxylase signature 234 255 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Arginine decarboxylase signature 258 280 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Arginine decarboxylase signature 386 403 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Arginine decarboxylase signature 511 532 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Arginine decarboxylase signature 536 561 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PRINTS Arginine decarboxylase signature 593 614 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 158 176 IPR022653 -
Cma20g00804 718 SUPERFAMILY PLP-binding barrel 126 408 IPR029066 -
Cma20g00804 718 TIGRFAM speA: arginine decarboxylase 56 684 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 CDD PLPDE_III_ADC 117 614 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cma20g00804 718 PANTHER ARGININE DECARBOXYLASE 1 697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00804 K01583 E4.1.1.19; arginine decarboxylase [EC:4.1.1.19] - csv:101204085 1253.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00359 Cma20g00804 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00359 Cma-Chr2:1765533 Cma20g00804 Cma-Chr20:3785981 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g51 Blo02g00651 Blo15g00662 Bda06g00971 Bda08g00964 Bpe07g00493 . . Bma12g00535 . . Cma02g00359 Cma20g00804 Car02g00226 Car20g00688 . . . . . . . . . . . . . . . . . Cone12ag1192 Cone8ag1240 . . Lsi10g00424 . Chy11g00329 . . . . . . . . . Sed05g3557 Cmo02g00362 Cmo20g00812 . . . . Cpe16g00280 Cpe05g01297 Bhi10g01930 Tan05g1229 Cmetu11g0754 . Hepe08g0965 . . . . . . . . . . Csa02g01315 . Cme11g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004369 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 4 1 1 1 1 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00804 Cma_Chr20 FPKM 94.97171 105.74308 92.146553 97.650169 60.423847 65.843994 57.525085 294.333984 279.599396 326.867371