Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00806 ATGAGCTTTTCGTCGACGGCGGGATATTTGGCTCGGCGAGCCGCCCAGAAGGAGAGGGTTCGGATCCTTTACCGGCGAGCCCTCAAAGACACTCTCAATTGGGCTGTCCATCGCCATCTCTTTTATCGAGATGCGTCGGACCTCCGGGAGAGATTCGATGCAAACAAGCACGTGGAAGATCTTGACAGAATAGATAGGATGATAGCTGATGGAGAAGCTTCCTATAATAAGTGGCGGCATCCCGATCCCTATATCGTTCCTTGGGCTCCGGGTGGTTCTAAGTTTACGCGAAACCCAACTCCACCTCCGGGGATCGAGATCATATATAACTATGGGCGGGAAGATCACTGA 351 52.14 MSFSSTAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYRDASDLRERFDANKHVEDLDRIDRMIADGEASYNKWRHPDPYIVPWAPGGSKFTRNPTPPPGIEIIYNYGREDH 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3791944 3796036 - CmaCh20G008060.1 Cma20g00806 316620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00806 116 Pfam Complex 1 protein (LYR family) 19 72 IPR008011 -
Cma20g00806 116 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT 2 115 IPR033034 GO:0006120
Cma20g00806 116 CDD Complex1_LYR_NDUFB9_LYRM3 16 92 IPR045292 -
Cma20g00806 116 PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 9 2 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00806 K03965 NDUFB9; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9 - jre:109006539 228.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00361 Cma20g00806 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00361 Cma-Chr2:1778931 Cma20g00806 Cma-Chr20:3791944 5.30E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g47 . . . . . . . . . . Cma02g00361 Cma20g00806 Car02g00228 Car20g00691 . . . . . . . . . . . . . . . . . Cone12ag1190 Cone8ag1237 . . Lsi10g00421 . Chy11g00331 . Blo04g00542 . . Bda14g00582 Bpe15g00839 . Bma03g00575 . Sed01g0255 Cmo02g00364 Cmo20g00814 . . . . Cpe16g00279 Cpe05g01295 Bhi10g01933 Tan05g1231 Cmetu11g1579 . Hepe08g0968 . . . . . . . . . . Csa02g01313 . Cme11g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008255 1 1 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00806 Cma_Chr20 FPKM 17.072821 18.746937 12.225107 10.301263 16.568333 15.25716 15.877378 16.047754 15.375152 17.682508