Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00807 ATGGCGTCTGCTTCTCTCAAATCCTCCCCTGTTCTTGACAAGCTCGAGTGGGTCAAAGGCCAGTCTCTCCGGCAGCCATCCGTCTCCGTCGTCCGCTGCCACCCCACCGCCGCCCCCTCCACCCTCACCATCCAGGCGAACCGTCAGGCTTACAGAACTCTGCTGGTCACTGCACCAGAGCTCGGCAAGTGCATCTCCGGTGCTATACTTTTTGAAGAGACGCTCTACCAATCCACCGTCGACGGCGAGAAGATTGTCGACGTTTTGGTGAAGCAGGGCATTGTTCCGGGAATCAAAGACAATGGACTGGTGCCGATTGTGGAGCCAGAGATCTTGCTGGATGGAGAGAACGGAATCGACAGAACCCTCGAGGTAGCCCAGAAAGTTTGGGCAGAGGTGTTCTTCTACCTTGCAGAAAACAATGTCCTGTTCGAAGGAATTCTTCTGAAACCAAGCATGGTCACTCCAGGAGCAGAGAGCAAAGAAAAAGCCAGCCCTGAAAAGGTTGCAGATTACAACACTGTGTCTCTTCTCAAAAGAAGAATCCCTCCAGCAGTTCCTGGAATCATGGCAAGTGGGCAATCGGAGGTAGAGGCCACATTGAACTTGAATGCCATGAACCAAGCGCCAAACCCATGGCATGTGTCCTTCTCGTACGCCAGAGCTCTGCAGAACACATGTTTGGAGACATGGGGTGGGCGGCCGGAGAGTGTGAAGGCCGCACAGGATGCTTTGATTCTAAGAGCCAAGGCAAACTCGCTTGCGCAGCTTGGGAAGTACACTGGTGAGGGTGAGTCCGCTGAGGCTAAGGAGGGAATGTTCGTCAAGGGCTACACATACTAA 843 53.74 MASASLKSSPVLDKLEWVKGQSLRQPSVSVVRCHPTAAPSTLTIQANRQAYRTLLVTAPELGKCISGAILFEETLYQSTVDGEKIVDVLVKQGIVPGIKDNGLVPIVEPEILLDGENGIDRTLEVAQKVWAEVFFYLAENNVLFEGILLKPSMVTPGAESKEKASPEKVADYNTVSLLKRRIPPAVPGIMASGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLETWGGRPESVKAAQDALILRAKANSLAQLGKYTGEGESAEAKEGMFVKGYTY 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3796753 3799549 - CmaCh20G008070.1 Cma20g00807 316621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00807 280 Pfam Fructose-bisphosphate aldolase class-I 45 99 IPR000741 GO:0004332|GO:0006096
Cma20g00807 280 Pfam Fructose-bisphosphate aldolase class-I 100 280 IPR000741 GO:0004332|GO:0006096
Cma20g00807 280 Gene3D Aldolase class I 102 279 IPR013785 -
Cma20g00807 280 Gene3D Aldolase class I 36 101 IPR013785 -
Cma20g00807 280 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 44 99 - -
Cma20g00807 280 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 99 280 IPR000741 GO:0004332|GO:0006096
Cma20g00807 280 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 44 99 IPR000741 GO:0004332|GO:0006096
Cma20g00807 280 SUPERFAMILY Aldolase 45 280 - -
Cma20g00807 280 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 142 152 IPR029768 -
Cma20g00807 280 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 99 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00807 K01623 ALDO; fructose-bisphosphate aldolase, class I [EC:4.1.2.13] - oeu:111410094 323.168
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00362 Cma20g00807 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00932 Cma-Chr15:4928170 Cma20g00807 Cma-Chr20:3796753 1.64E-19 dispersed
Cma02g00362 Cma-Chr2:1786100 Cma20g00807 Cma-Chr20:3796753 1.82E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g44 . Blo15g00665 Bda06g00513 . Bpe07g00495 . . Bma12g00539 . . Cma02g00362 Cma20g00807 Car02g00229 Car20g00692 . . . . . . . . . . . . . . . . . . . . . Lsi10g00419 . Chy11g00332 . . . . . . . . . Sed01g0256 Cmo02g00365 Cmo20g00815 . . . . Cpe16g00278 Cpe05g01294 Bhi10g01934 Tan05g1232 Cmetu09g0265 . Hepe08g0970 . . . . . . . . . . Csa02g01312 . Cme11g00173
Vvi4g1081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0256 . . . Cma20g00807 . . . . Bhi10g01934 Tan05g1232 Cmetu09g0265 . Hepe08g0970 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0044923 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00807 Cma_Chr20 FPKM 0.0 0.0 1.115299 0.979524 13.84406 13.068462 11.97812 4.048219 4.516741 4.603963