Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00811 ATGGAGTGTTTGGAGGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGAAATTTGCTCAACCAGACGATATGGTGGAGGATGATGAGTGTTCGAACGGAGCTGATCTCGTCGCCGGCGAGGATTTTGAGGTCGACGAGTTTTTGAACTTCTCTCATGGAGATTTCGAACATGGGTCTGCTTTGAGAGTTGAAGAAGACGACGATTACGAAGAGTTTGAGAAAAATCGGCTCTCTGTTTCGCCGTATTCGAACCAGTCCGGCGGGTTTCCGACCGCCGGAGAAGAGGGCTCGAAGGCGGTTGTTGCCGTTGAGCTTGCTATTCCGGGCGATGCTTTAGCGGACCTTGAATGGGTTTCTCAATTCGTCGATGATTCTGGCTCGGAATATTCCTGCGCCGCTGTGTCTTTGAACCGCTCCAAACCAGAAAAGAAACTCACCGGAGCTGTAATTTCGTGTTTGCCGACGTCTTTTCCGGTCAAACCGAGGACGAAAAGGCCGAGACAATTTCGTCAAGCAAAATCCAACACTTCTTCTCTCAACCAATCGTCGTCGTCGTCGTCCTTGTCTTCGTCCTCCGGTGTTTCCTCCGCCGCACCTTGGTTCATCTTCTCCGACGCCGGCGAGAACGTGGACTCTTTGAACGTCTCCGGCGAGCCAACGATGAAGCAGAGGAAAAAGTCGTCGTCGGCGGCGGCGGTTTTTCAACCCGTCGGCCCGACCGGTCAGATTCCGCGGCGGTGCAGCCATTGTCTTGTTCAGAGGACCCCACAGTGGCGGACCGGTCCAAACGGGGCCAAAACGCTCTGTAACGCTTGTGGGGTCCGGTATAAATCCGGTCGCCTCTTCCCGGAGTATAGACCGGCGCTGAGTCCCACTTTTTGCAGCGGTATTCACTCGAACAGTCATCGGAAAGTGCTTGAAATGAGGAAGACGAAAGAGGTCCCTGAACCGGCGTCCGATTTGGCCCCAATGGTCCCGAGTTACTAA 996 53.51 MECLEAKALKSSFHWELAMKFAQPDDMVEDDECSNGADLVAGEDFEVDEFLNFSHGDFEHGSALRVEEDDDYEEFEKNRLSVSPYSNQSGGFPTAGEEGSKAVVAVELAIPGDALADLEWVSQFVDDSGSEYSCAAVSLNRSKPEKKLTGAVISCLPTSFPVKPRTKRPRQFRQAKSNTSSLNQSSSSSSLSSSSGVSSAAPWFIFSDAGENVDSLNVSGEPTMKQRKKSSSAAAVFQPVGPTGQIPRRCSHCLVQRTPQWRTGPNGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSGIHSNSHRKVLEMRKTKEVPEPASDLAPMVPSY 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3817823 3819388 - CmaCh20G008110.1 Cma20g00811 316625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00811 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 307 - -
Cma20g00811 331 MobiDBLite consensus disorder prediction 217 238 - -
Cma20g00811 331 PANTHER GATA TRANSCRIPTION FACTOR 2 331 - -
Cma20g00811 331 CDD ZnF_GATA 249 306 IPR000679 GO:0006355|GO:0043565
Cma20g00811 331 Gene3D - 243 317 IPR013088 GO:0006355|GO:0008270
Cma20g00811 331 ProSiteProfiles GATA-type zinc finger domain profile. 248 280 IPR000679 GO:0006355|GO:0043565
Cma20g00811 331 MobiDBLite consensus disorder prediction 173 196 - -
Cma20g00811 331 PIRSF Txn_fac_GATA_plant 6 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cma20g00811 331 SMART GATA_3 244 294 IPR000679 GO:0006355|GO:0043565
Cma20g00811 331 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Cma20g00811 331 PANTHER GATA TRANSCRIPTION FACTOR 2 331 - -
Cma20g00811 331 MobiDBLite consensus disorder prediction 162 196 - -
Cma20g00811 331 Pfam GATA zinc finger 250 283 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00811 - - - cmos:111448191 594.349
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00704 Cma20g00811 CCT
Cma03g00704 Cma20g00811 ECH
Cma02g00364 Cma20g00811 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00644 Cma-Chr16:3349745 Cma20g00811 Cma-Chr20:3817823 2.36E-52 dispersed
Cma20g00811 Cma-Chr20:3817823 Cma05g00584 Cma-Chr5:2900468 5.66E-42 dispersed
Cma02g00364 Cma-Chr2:1797272 Cma20g00811 Cma-Chr20:3817823 1.35E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37032 PF00320 GATA 7.90E-15 CL0167 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00811 Cma_Chr20 FPKM 32.620586 35.709999 34.774189 29.984356 64.775055 47.111683 60.440357 11.245452 11.955315 11.186164