Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00814 ATGGCTTCCGTAATCCTCCATTCTCCTTTCTCAGTCACTGCTCGAATCCATAACCCTAATAATCTCAGACCACTCTCCCCCCCTTCATTTCCCACCATTTTCTTTCGTTCATCTTCCTCCCCTTTAGCTATAGATTTGTCGTCGCGGATTAACCGCCGATTCGCGGTTCCTCGCCGGCGTCACGAGTGGGAAGTCGGCTGCCTCGAGATTGAGAGCGAAATCGGCATTGAAGTACAAGAAAATGAACAGTTATTGGGGAGTGGAGGAGGAGAAGAATTGGGGAGCCAAGGGTTGTTGACTCAGATGAAGGAGATTGTAACGTTTACAGGGCCTGCCATTGGATTGTGGATTTGTGGACCATTAATGAGTCTCATTGACACTGCGGTTATTGGCCAGGGAAGCGCTGTTGAGCTTGCTGCTTTAGGCCCAGCAACAGTGTTATGTGATTATACGAGCTACGTGTTCATGTTTCTTAGTATCGCAACTTCAAACATGGTAGCCACAGCCCTTGCCAAACAGGATAAAAACGAAGTGCAGCACCACATATCAGTATTGCTATTTGTGGGGCTGATATCTGGTTTCCTGATGCTCTTAGTTACCAAACTATTGGGTTCAGTGGCGCTAACTGCTTTTGTGGGGACAAAGAACGCTGATATCATACCGGCTGCAAACACCTATATTCAGATTCGAGGTTTGGCATGGCCCGCAATTCTCACTGGCTGGGTTGCTCAGAGTGCAAGTCTTGGCATGAAAGATTCCTGGGGACCTCTGAAGGCTTTGGCTGTTGCGAGTATTGTAAATGGCATAGGTGATGTTGTCCTATGCATGTTTCTAGGATATGGTATTGCTGGTGCAGCATGGGCAACTATGGTATCACAGGTTATTGCAGCTTATATGATGATAGAAGCACTAAACAAGAAAGCATACAATGGATTTGCTCTATCGGTTCCCTCGTCTGGTGAATTCTTTTCGATACTTGGACTTGCTGCTCCTGTATTTCTACCAATGATGTCAAAGGTGGTTTTTTATTCTCTCCTCATCTACTATGCTACGTCGATGGGCACACACATCATGGCTGCTCATCAGGTTATGATTCAAACATTTTGTATGTGTACCGTATGGGGTGAACCTCTCTCTCAAACTGCTCAGTCATTTATGCCTGGGTTGATCAATGGAGTGAATCGTAATTTGGATAAGGCCCGGATGTTGCTAAAGTCACTCTTGATCATAGGAGCTATATTTGGTCTCATATTAGGGTCAATTGGAACATTAGTTCCTTGGTTGTTCCCCTATCTCTTCACACCTGAAGAGAGGATTATTCAGGAGATGCATAAAGTGTTGATTCCATATTTCTTGGCGCTAGTCATAACACCCCCAACTCATAGCTTAGAAGGGACGTTATTGGCTGGCCGAGATCTTAAATTTATTAGTTTGTCGATGACTGGATGCCTTTCTCTTGGCGCCCTTGTATTGCTGGTTATTAGCAGTAGGGGTTATGGTTTGACAGGCTGCTGGTATGCGCTGACCGGATTTCAATGGGCTCGGTTTCTTATCGCTCTTCGGCGCATCCTCTCTCCTGATGGAATGCTTTACAGCAGTGATTTAAGCCATTATAAACTAGAAAAGCCAAAAGCTGCATAG 1641 45.4 MASVILHSPFSVTARIHNPNNLRPLSPPSFPTIFFRSSSSPLAIDLSSRINRRFAVPRRRHEWEVGCLEIESEIGIEVQENEQLLGSGGGEELGSQGLLTQMKEIVTFTGPAIGLWICGPLMSLIDTAVIGQGSAVELAALGPATVLCDYTSYVFMFLSIATSNMVATALAKQDKNEVQHHISVLLFVGLISGFLMLLVTKLLGSVALTAFVGTKNADIIPAANTYIQIRGLAWPAILTGWVAQSASLGMKDSWGPLKALAVASIVNGIGDVVLCMFLGYGIAGAAWATMVSQVIAAYMMIEALNKKAYNGFALSVPSSGEFFSILGLAAPVFLPMMSKVVFYSLLIYYATSMGTHIMAAHQVMIQTFCMCTVWGEPLSQTAQSFMPGLINGVNRNLDKARMLLKSLLIIGAIFGLILGSIGTLVPWLFPYLFTPEERIIQEMHKVLIPYFLALVITPPTHSLEGTLLAGRDLKFISLSMTGCLSLGALVLLVISSRGYGLTGCWYALTGFQWARFLIALRRILSPDGMLYSSDLSHYKLEKPKAA 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3837919 3844114 + CmaCh20G008140.1 Cma20g00814 316628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00814 546 Pfam MatE 115 269 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma20g00814 546 CDD MATE_DinF_like 101 525 IPR044644 -
Cma20g00814 546 TIGRFAM matE: MATE efflux family protein 111 505 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cma20g00814 546 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 43 535 - -
Cma20g00814 546 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 43 535 IPR044644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00814 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101206241 859.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00367 Cma20g00814 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00954 Cma-Chr17:7104524 Cma20g00814 Cma-Chr20:3837919 3.11E-11 dispersed
Cma20g00083 Cma-Chr20:356692 Cma20g00814 Cma-Chr20:3837919 5.63E-12 dispersed
Cma20g00814 Cma-Chr20:3837919 Cma08g00529 Cma-Chr8:3053089 2.78E-07 dispersed
Cma02g00367 Cma-Chr2:1824000 Cma20g00814 Cma-Chr20:3837919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g23 . Blo15g00670 . . . . . Bma12g00542 . . Cma02g00367 Cma20g00814 Car02g00235 Car20g00698 . . . . . . . . . . . . . . . . . . . Cone3ag1216 Cone10ag1100 . . Chy11g00340 . . . . . Bpe15g00846 . . . Sed01g0267 Cmo02g00372 Cmo20g00822 . . . . . . Bhi10g01948 Tan05g1245 . . Hepe08g0980 . . . . . . . . . . Csa02g01303 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00814 Cma_Chr20 FPKM 4.715949 6.525858 10.487719 9.198722 13.069807 12.381748 15.98724 5.333325 5.893333 6.477593