Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00817 ATGAAGATCCACTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCTCTGCCTGCGACCACCACGTCCACCGAGCCAACAAGCTCGCCGAGAAACACAGCCGATTCACACTCTTCCGATCCACTCCCACCGCCAATTCACCGCCGTCGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTATTCTATCTTGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACGGCGCAAGCGAACACACCCAGAAACACAGCCGGTTTCTTCTCACTGGTGTGAAGGTTTCACCGTCGCCGGCGACTTCCTCTTCCTCCTCCTCTATCTCCGGCGGCGGCGATGAAAGCGAGGAGGTCACAATTGAAGCTGAAATTGGGATCTTTAAGGCGAGATCGAGGAAGGAGGCGAAAATGGGGTCAAAAGGGTTGCTTCGAGGTCCTCTAATGGAGGATTTGCAGGCACCGATTGTGGGGAATTTTGGTGGGATGAGTGAAAATGGGGTTTCGTTTTCGACAAGTAACATATCGGAGTATTTGGAGAGCTTGCCGGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCGTGTGTTGCTGATGTTTTCTGTAAAGTTTGA 645 51.94 MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSCDICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSISGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVGNFGGMSENGVSFSTSNISEYLESLPGWCVEEFLDSSCVADVFCKV 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3862961 3863605 - CmaCh20G008170.1 Cma20g00817 316631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00817 214 MobiDBLite consensus disorder prediction 107 125 - -
Cma20g00817 214 CDD Bbox1_BBX-like 5 47 - -
Cma20g00817 214 Gene3D Classic Zinc Finger 1 111 - -
Cma20g00817 214 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma20g00817 214 CDD Bbox1_BBX-like 60 102 - -
Cma20g00817 214 MobiDBLite consensus disorder prediction 107 128 - -
Cma20g00817 214 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 213 - -
Cma20g00817 214 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 213 - -
Cma20g00817 214 SMART bboxneu5 55 102 IPR000315 GO:0008270
Cma20g00817 214 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00817 - - - bhj:120089126 261.536
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma19g00687 Cma20g00817 CCT
Cma19g00687 Cma20g00817 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01083 Cma-Chr11:5944389 Cma20g00817 Cma-Chr20:3862961 4.42E-65 dispersed
Cma01g01945 Cma-Chr1:12606514 Cma20g00817 Cma-Chr20:3862961 6.52E-45 wgd
Cma12g00429 Cma-Chr12:2230092 Cma20g00817 Cma-Chr20:3862961 1.23E-48 wgd
Cma19g00687 Cma-Chr19:7115841 Cma20g00817 Cma-Chr20:3862961 3.99E-65 wgd
Cma20g00817 Cma-Chr20:3862961 Cma05g00283 Cma-Chr5:1210628 2.24E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37033 PF00643 zf-B_box 4.40E-05 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00817 Cma_Chr20 FPKM 0.160905 0.108673 0.369014 0.411216 0.061266 0.059459 0.076542 0.483081 1.165293 0.573324