Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00819 ATGGTGATGGGTTTATCTCTCTTCGTCGCTCTCTCTCTTATAGCCGCCACGGCGATTGGCAGTGAGGTACTCTCCGGAGAATCGGAGGGAGATTTTATAATCCGTCAGGTTGTCGACGACGGAGGAGTCAACGGAGGAAGTAATGGCGACGATCTGCTACTCGGAGCCGAGCACCACTTTTCGATCTTTAAGCGAAGGTTTGGGAAGTCGTACGCCTCCAACGAGGAGCATGATCACCGGTTCAGGATCTTTAAAGCTAACCTGAGGCGAGCTCGACGCCACCAGGCTCTTGATCCCTCTGCTAGTCATGGCGTCACTCAGTTTTCTGATTTGACTCCATCGGAGTTCAGGAGATCGTTTCTAGGGCTTAGAGATCGTCTTCGTCTCCCTGCGGATGCTAACAAGGCCCCTATTCTTCCTACAGATGATCTCCCAACCGATTTCGATTGGAGAGATCACGGCGCTGTCACGGAAGTCAAGAATCAGGGTTCGTGTGGATCGTGCTGGAGTTTCAGTACAACCGGTGCTCTTGAAGGCGCTAACTTTCTTGCTACTGGAAAACTTGTTAGCCTTAGCGAACAACAGCTTGTAGACTGTGATCACGAGTGTGATCCAGAAGAAAAAGACTCCTGTGATTCTGGCTGCAATGGAGGGCTAATGAACAGTGCATTCGAGTATACACTGAAAGCCGGTGGACTTATGCAAGAGAAAGACTACCCATACACTGGTACAGATCGTGGAACCTGCAAATTTGACAAGAGCAAAATTGCTGCATCAGTGGCCAACTTTAGTGTTGTGTCCCTTGATGAAGAACAAATTGCTGCCAATCTCTTGAAGAATGGCCCTCTTGCAGTTGCTATCAACGCCGTTTACATGCAGACATATGTAGGAGGCGTTTCTTGCCCTTACATTTGCTCAAAGCGTTTGGATCATGGTGTTTTGTTGGTTGGTTATGGGTCTGCTGGCTATGCTCCCATCCGGATGAAGGAGAAGCCTTACTGGATCATTAAGAACTCGTGGGGAGCGAAATGGGGGGAGAATGGATTCTACAAAATCTGCAGGGGTCGCAACGTCTGTGGGGTCGATTCCATGGTATCGACAGTCGCCGCAGTTCATACCGCCGCAAACTAG 1131 49.6 MVMGLSLFVALSLIAATAIGSEVLSGESEGDFIIRQVVDDGGVNGGSNGDDLLLGAEHHFSIFKRRFGKSYASNEEHDHRFRIFKANLRRARRHQALDPSASHGVTQFSDLTPSEFRRSFLGLRDRLRLPADANKAPILPTDDLPTDFDWRDHGAVTEVKNQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEKDSCDSGCNGGLMNSAFEYTLKAGGLMQEKDYPYTGTDRGTCKFDKSKIAASVANFSVVSLDEEQIAANLLKNGPLAVAINAVYMQTYVGGVSCPYICSKRLDHGVLLVGYGSAGYAPIRMKEKPYWIIKNSWGAKWGENGFYKICRGRNVCGVDSMVSTVAAVHTAAN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3876090 3878486 - CmaCh20G008190.1 Cma20g00819 316633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00819 376 SMART Inhibitor_I29_2 60 116 IPR013201 -
Cma20g00819 376 PANTHER BNAA04G12170D PROTEIN 37 369 - -
Cma20g00819 376 PRINTS Papain cysteine protease (C1) family signature 162 177 IPR000668 GO:0006508|GO:0008234
Cma20g00819 376 PRINTS Papain cysteine protease (C1) family signature 311 321 IPR000668 GO:0006508|GO:0008234
Cma20g00819 376 PRINTS Papain cysteine protease (C1) family signature 333 339 IPR000668 GO:0006508|GO:0008234
Cma20g00819 376 Pfam Cathepsin propeptide inhibitor domain (I29) 60 116 IPR013201 -
Cma20g00819 376 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 333 352 IPR025661 -
Cma20g00819 376 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 309 319 IPR025660 -
Cma20g00819 376 CDD Peptidase_C1A 145 368 IPR039417 -
Cma20g00819 376 Pfam Papain family cysteine protease 144 367 IPR000668 GO:0006508|GO:0008234
Cma20g00819 376 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 162 173 IPR000169 -
Cma20g00819 376 SMART pept_c1 144 369 IPR000668 GO:0006508|GO:0008234
Cma20g00819 376 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 37 369 - -
Cma20g00819 376 Gene3D Cysteine proteinases 47 369 - -
Cma20g00819 376 SUPERFAMILY Cysteine proteinases 58 368 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00819 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101204401 680.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01089 Cma-Chr11:5993034 Cma20g00819 Cma-Chr20:3876090 0 dispersed
Cma19g00682 Cma-Chr19:7077999 Cma20g00819 Cma-Chr20:3876090 4.89E-79 dispersed
Cma20g00819 Cma-Chr20:3876090 Cma03g00959 Cma-Chr3:6826020 2.59E-70 dispersed
Cma04g01385 Cma-Chr4:7084139 Cma20g00819 Cma-Chr20:3876090 6.01E-143 transposed
Cma12g00432 Cma-Chr12:2259888 Cma20g00819 Cma-Chr20:3876090 0 wgd
Cma19g00681 Cma-Chr19:7076395 Cma20g00819 Cma-Chr20:3876090 9.56E-75 wgd
Cma02g00371 Cma-Chr2:1863574 Cma20g00819 Cma-Chr20:3876090 0 wgd
Cma20g00819 Cma-Chr20:3876090 Cma05g00276 Cma-Chr5:1172907 3.41E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1032 . . . . Bpe15g00323 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g00819 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00819 Cma_Chr20 FPKM 291.118958 336.982056 91.608368 95.214806 50.255569 39.137875 48.069111 146.301941 139.668396 144.766006