Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00821 ATGGCGGAGCAAAGGACCGAGGATGATAGCTCAACGAAGGAAGGCGGAGAGGTGGAGAAGGAGAAACAGAAGAAGAATATGGATCGGGAACTTCTCAGCTGCTTGCTCCAACCTACAAGTATTGGTGTTGATCCGGACTATATTGGCATGCGTCGTCTCTTGCTCCATCGGAAGGCTGAAGCCGCGGTTCTTCGTCGGAAAGACTGGAAGTGCAATGGAAAAGGTTATGTGGCATTTCGCAATTACATACGCCGGCCAAGGAATTGGGAAAGCTCGCGTATACCAAGTCTTCAAAGCACCCCCGGAAACAGTGGAAGATGGATTCTTCCTCCAAGTTCGATCTCTGCCTTGCATGAGGTGGAGAGCTGGAGTTCTATCAAGGACTTACAGAGTCAACGAAGATCAAGTTTTAGCTCAAATGCAAGTGATAACAGTCAGCTACATACTCGTAGAACTGAATTTGCATATTCTTTTGTCGGAATGCATTGTATATTTGATCAATGCAAAGTTGCTGTTACGGTTTTGAAGTTTGGGCACATGAGCTCTGATCTATTAGCATATGGTGCAGCGGATGGGTCCTTGACTGTATGCAATGTCTCTGAACCATCTTCAACCGTCAAGCATTTGCTGGGCCATTCAAAAGACTTAACAGACTTTGATTTTTCATCGAATAATCAGTACATTGCATCATCGTCCATGGATAAGACCGTTAGAGTATGGGAGATATCAAGGGGAATTTGCATTAGAGTAATCTATGGAGTATCTTCACAACTGTGTATACGTTTTCATCCGGTAAATAACAACTTCCTCTCAGTTGGCAATGCAAATAAGGAAATCACGGTGTTTAATTTCAGCACTGGGAGGATTGTGACAAAATTAGTTCTTGATAGTGAGGTTACATCCATGGACCATGATCACACTGGTCAGATCCTTTTCTGTGGAGACGGAAATGGATATGTTTACTCTGTGAGCATGAACTCTCATACAGGAGCTTTATCCCGTGCTCACCGCCAATGGTGTAGTAGCCGGCGCAAATCTCCTGTATGTACTGTACAATATCGAAGCTTCTCTCTGCTGGCCAGGGGCCCTGTATTGCTAACTTGCACTCAAGATGGGAACTTGTCTTTCTTCAGTATTGCTTTGGAAGTTCAAGGATATTTGACCCTTCGTTGCTCACTCAAATTAGCTCCAAGGATACATAGCATCCGTGCTTCATTCTGCCCCCTACTCTCCCTGGAAAAAGGAGAGTACATTGTTGCAGGAAGTGAGGATTCAAATGTCTACTTCTATGATTTGACACGACCCAAACATACTTGTGTCAACAAGCTCCAGGGCCACCAGTTTCCAGTCATTGGGGTTGCCTGGAACCATGGGGAGAATCTGTTGGCTTCGTCAGATCTTTATGGGACGGTAATTGTATGGAAGAGATCAAAGATAAGTTAG 1443 44.63 MAEQRTEDDSSTKEGGEVEKEKQKKNMDRELLSCLLQPTSIGVDPDYIGMRRLLLHRKAEAAVLRRKDWKCNGKGYVAFRNYIRRPRNWESSRIPSLQSTPGNSGRWILPPSSISALHEVESWSSIKDLQSQRRSSFSSNASDNSQLHTRRTEFAYSFVGMHCIFDQCKVAVTVLKFGHMSSDLLAYGAADGSLTVCNVSEPSSTVKHLLGHSKDLTDFDFSSNNQYIASSSMDKTVRVWEISRGICIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIVTKLVLDSEVTSMDHDHTGQILFCGDGNGYVYSVSMNSHTGALSRAHRQWCSSRRKSPVCTVQYRSFSLLARGPVLLTCTQDGNLSFFSIALEVQGYLTLRCSLKLAPRIHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPKHTCVNKLQGHQFPVIGVAWNHGENLLASSDLYGTVIVWKRSKIS 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3888142 3904238 + CmaCh20G008210.1 Cma20g00821 316635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00821 480 SUPERFAMILY WD40 repeat-like 172 477 IPR036322 GO:0005515
Cma20g00821 480 MobiDBLite consensus disorder prediction 1 25 - -
Cma20g00821 480 Gene3D - 401 479 IPR015943 GO:0005515
Cma20g00821 480 PANTHER WD REPEAT PROTEIN 26-RELATED 20 478 - -
Cma20g00821 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 245 - -
Cma20g00821 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 480 IPR001680 GO:0005515
Cma20g00821 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 480 - -
Cma20g00821 480 SMART WD40_4 344 378 IPR001680 GO:0005515
Cma20g00821 480 SMART WD40_4 436 475 IPR001680 GO:0005515
Cma20g00821 480 SMART WD40_4 202 241 IPR001680 GO:0005515
Cma20g00821 480 SMART WD40_4 157 198 IPR001680 GO:0005515
Cma20g00821 480 SMART WD40_4 395 431 IPR001680 GO:0005515
Cma20g00821 480 SMART WD40_4 244 283 IPR001680 GO:0005515
Cma20g00821 480 SMART WD40_4 286 324 IPR001680 GO:0005515
Cma20g00821 480 Pfam WD domain, G-beta repeat 439 475 IPR001680 GO:0005515
Cma20g00821 480 Pfam WD domain, G-beta repeat 205 240 IPR001680 GO:0005515
Cma20g00821 480 PANTHER WD REPEAT-CONTAINING PROTEIN 13 20 478 - -
Cma20g00821 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 250 IPR001680 GO:0005515
Cma20g00821 480 ProSitePatterns Trp-Asp (WD) repeats signature. 228 242 IPR019775 -
Cma20g00821 480 Gene3D - 127 400 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00821 K24739 WDR13; WD repeat-containing protein 13 - csv:101204649 868.226
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00821 Cma-Chr20:3888142 Cma08g00343 Cma-Chr8:1961797 3.49E-24 dispersed
Cma02g00372 Cma-Chr2:1867230 Cma20g00821 Cma-Chr20:3888142 9.19E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00821 Cma_Chr20 FPKM 12.774515 11.525456 9.481256 9.367618 7.881531 6.757204 8.332405 12.677899 11.69233 13.918557