Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00823 ATGGCTACTTACTACTCGAGTTCAAATAACGAAAGGGATACTACTCCAATCCTCTATTCGAGGGGAGCTTTGCTCGGTTCGTATGAAGAAACAGCAGTTCTTCCACGGAATATGATGATGAATGCAAATTCTGGGACGTTCATGGATTCATTGCCTTCACCGGCACAGAATGGTTGTAGTTCGATAACGCCAGTTGGAGCAGTTGGAATGACCCAACAGCAGCAGGAGTTCTTATCGAATCTTGGTGGTTCGCAAATTTCTGATCATGATTTCAATACATGGAGAGAGGATCGGAGTGAAATGCTTGGTACGAACTCGATGTGTGGATCGACCAATGTTCTTCGTGGTGGGCAGAATTTGCAGGGTCAGGGGTTGTCCCTTACTCTCAGTACACAAATCCCATCTGGAATCCAAATGGCTTCAATCCCCTACAGAGATTCGGATGTCAGTTTAGCTTCATTCCTGAGGCCTAATCCGACTAGCTCGAGTGAGGATGGCTGCAGAAATGGCGCTTCTCGAGATGAACAATTGAGAAATGGAGAAAACTTGGCCAAGGGTGAATTATCTCCTTACAGCATGTCTAGTATTGCAAGAACTATGCCTAATTCGAAGTACCTCAAGGCAGCACAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGGCCGAATAATGAGAGAGACCCGAGTTCTAACGAGCATGAAACTGGAACTGCTGAGAATGGCGATGCAGGAGCTAAAAACGACACTTCGATGCAAACTGCAAGTGGAGCGTCTTCAAAACCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATGGCGAAAAACAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATAGTAGTGTCATCATTTGATGTGATTGCTGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCCATAGCTGATCAAGTCAGAGCTACTCGTAAAAGCCTAGGAGAGCACGAGAATTCTGGAAACGACAAAGGAGTTGGAATCACTCGTCTTCGATACGTTGACCAGCAGTTAAGGCAACAGAGAGCTCTTCAACAGCTTGGCATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGATTGCCTGAGAACTCTGTTTCGATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTTGCGAGGCAGACGGGTTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGCAGTGTGGACATGGACTCTATATCATCATCTGAAAATGCTAGCAAGGCAACAAAAGGAGATAACAAGACCTTCGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGCTCAACAGCCACAGAAAGATGTAGCGCAGGAGATATTGTTGACTTGAAATCAGACCTCTCTAATCTCGCAAACTCGGGTTCCAACAGACTAGCTAGTTGCCAAAATGGTTCTCACATCGAAGCCGAAAACGAGCTGATAAAGCCAAATGAGGAGCTAAGGTCTAATGAAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGGAGAGAGTGACAGGTTTATGGCTGCTGCTGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTCGGGACGGTTGGCGGGGTATCACTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGTGGCATACCTATGCCTGCTGGGACACACCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAACGCTGCTGCTGCAGCGTCTTCTCTCGGGGAAACAGTGCATTTTGAATGCGTAAATGCTGCTGGGAATCCGCAACTGAGGTTTGGCCCTTCCCATCTTTATCACGATTTTGTTGTGTAA 2037 45.85 MATYYSSSNNERDTTPILYSRGALLGSYEETAVLPRNMMMNANSGTFMDSLPSPAQNGCSSITPVGAVGMTQQQQEFLSNLGGSQISDHDFNTWREDRSEMLGTNSMCGSTNVLRGGQNLQGQGLSLTLSTQIPSGIQMASIPYRDSDVSLASFLRPNPTSSSEDGCRNGASRDEQLRNGENLAKGELSPYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERDPSSNEHETGTAENGDAGAKNDTSMQTASGASSKPQETGSNSTCELSHGEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIADQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENASKATKGDNKTFEDDKEEDLQQSASSTATERCSAGDIVDLKSDLSNLANSGSNRLASCQNGSHIEAENELIKPNEELRSNENNSNFFPDAIVQSQGESDRFMAAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGGIPMPAGTHHGFAAMRGDDMYNAAAAASSLGETVHFECVNAAGNPQLRFGPSHLYHDFVV 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3913634 3917835 + CmaCh20G008230.1 Cma20g00823 316637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00823 678 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 630 - -
Cma20g00823 678 MobiDBLite consensus disorder prediction 475 514 - -
Cma20g00823 678 MobiDBLite consensus disorder prediction 238 279 - -
Cma20g00823 678 MobiDBLite consensus disorder prediction 488 503 - -
Cma20g00823 678 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 93 630 - -
Cma20g00823 678 SUPERFAMILY Homeodomain-like 400 467 IPR009057 -
Cma20g00823 678 MobiDBLite consensus disorder prediction 223 237 - -
Cma20g00823 678 SMART prehox3 194 349 IPR006563 -
Cma20g00823 678 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Cma20g00823 678 MobiDBLite consensus disorder prediction 155 186 - -
Cma20g00823 678 SMART HOX_1 399 463 IPR001356 GO:0003677
Cma20g00823 678 MobiDBLite consensus disorder prediction 223 281 - -
Cma20g00823 678 Coils Coil 281 301 - -
Cma20g00823 678 Pfam Associated with HOX 201 348 IPR006563 -
Cma20g00823 678 CDD homeodomain 399 460 IPR001356 GO:0003677
Cma20g00823 678 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Cma20g00823 678 Gene3D - 394 472 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00374 Cma20g00823 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00505 Cma-Chr1:2580105 Cma20g00823 Cma-Chr20:3913634 6.44E-73 dispersed
Cma02g01304 Cma-Chr2:7678031 Cma20g00823 Cma-Chr20:3913634 2.46E-92 dispersed
Cma06g00526 Cma-Chr6:2460707 Cma20g00823 Cma-Chr20:3913634 9.45E-97 dispersed
Cma08g00675 Cma-Chr8:4153128 Cma20g00823 Cma-Chr20:3913634 1.75E-102 dispersed
Cma14g00361 Cma-Chr14:1592554 Cma20g00823 Cma-Chr20:3913634 2.18E-106 dispersed
Cma17g00850 Cma-Chr17:6603665 Cma20g00823 Cma-Chr20:3913634 4.08E-99 dispersed
Cma20g00147 Cma-Chr20:726212 Cma20g00823 Cma-Chr20:3913634 2.70E-91 dispersed
Cma20g00823 Cma-Chr20:3913634 Cma20g01145 Cma-Chr20:9080279 9.77E-85 dispersed
Cma02g00374 Cma-Chr2:1882851 Cma20g00823 Cma-Chr20:3913634 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37034 PF07526 POX 1.20E-50 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00823 - - csv:101205137 1143.64