Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00825 ATGGCCTCCCACCACCAGTTTTCTGCCGTTAAGGGCGCCAAAGTGCTCATGGTTGGAGCGGGGGGAATCGGCTGCGAGCTTCTCAAGACTCTGGCTCTCTCCGGGTTTCAGGACATTCATATTATTGACATGGACACCATAGAAGTGAGCAACTTAAACCGACAGTTTTTATTCCGAAAATCCCATGTAGGGCTATCAAAGGCTAAGGTTGCTCGGGATGCTGTCCTAAGATTCAGACCTCACGTCAGCATTACCTCATATCATGCAAATGTCAAGAATCAAGAATTTAATGTAGATTTCTTTAAACAATTTAATGTTGTTTTGAATGGACTCGATAACTTAGATGCAAGGCGACATGTGAATCGTTTGTGCTTGGCAGCTGATGTTCCTCTAGTCGAAAGTGGAACCACTGGATTCCTTGGACAGGTCACAGTCCATGTCAAGGGAAGAACAGAATGCTACGAGTGCCAGCCGAAACCGGCCCCAAAAACATATCCTGTCTGTACTATTACTAGTACTCCGTCAAAGTTTGTTCACTGCATCGTTTGGGCAAAAGATCTACTTTTTGCGAAGTTATTTGGAGATAAGAATCAAGAAAACGATCTAAACGTACGTTCAAGTGATTCTGCAAGTTCATCAAATCATGCTGAAGATATATTTGAACTTTACAAAGACGAAACCATTGAGCAGTATGGAAGAAGAGTGTTTGATCATGTTTTTGGGTACAATATCGAAGTAGCCTTATCTAACGACGATACATGGAAAAATCGCAATAAACCGAGGCCTATTTATAGTAGGGATATCCTGCCTGATGAACCAACTAAACAGAACGGAAACTCAGACAAAAACTGTGCCACTGACGATCAAAGTTCGTTTTCTGCCATGACATCTCTAGGCATGAAAAATCCCCAGGAGATATGGAGTCTTATGGAAAATTCCAGAATCTTCATCGAGGCTATTAAGCTTTTTTTCACTAAAAGGGAAAAGGATGTTGGGAACTTGACTTTTGATAAAGATGATCAGTTAGCTGTGGAGTTTGTAACTGCTGCTGCCAATATTAGAGCTGAATCTTTTGGTATTCCAATGCATAGCCTTTTTGAATCTAAAGGTATTGCTGGTAACATTGTGCATGCTGTTGCAACAACCAATGCTATTATTGCTGGGTTGATTGTGATCGAGGCAATTAAGGTGCTGCAAAACGATGCAAACAATTATCGGATGACGTATTGTCTCGAACATCCTTCGAGGAAGATGCTTCTTATGCCAGTGGAACCTTTTGAACCTAATAAATCCTGCTACGTTTGCTCCGAGACACCACTATCACTCGAGATAAATACGCATAAAGCAAAGCTGCGAGATTTTGTCGAGAAGATAGTCAAGGTGAAGCTTGGGATGAACTTTCCGCTTATTATGCATGGATCGGCCCTTCTTTATGAAGTTGGCGATGATCTCGATGAAGACATGGTGGCAAATTACGCTGCTAACCTTGAGAAGGTACTGTCGGAGTTCCCTTCTCCAGTCGTTAGCGGGACAATATTGTCGGTTGAGGATCTTCAACAAGAGCTTAGCTGCAGTATAAACATCAAACATAGAGATGAATTTGATGAGGAGAAGGAACCAGATGGTATGGTTCTATCTGGATGGCATCAAACTTCCCTGGAAAAGGGTGATAGCAGCAAGACTTTGGGCAATGGAGAAAGCATTTCAACACCCTCTGCTACAGAGGCCGATAAGAACGAAGACTCAGACATTGTTGCGTCGGGAAGGAAACGAAAACTAGACGAGGCACCTTCTTCAGCTGTCGATATATCAAGTTCGGCTAATGAAGCTAATAGCTTGAAGAAACTTGAAGAGCTTGACGACGACGACGACGACGACCTTGTCATGCTTGATGATGGGGATTCAGCTATGAACAAGAAGAAAAGATTGCAATAA 1935 42.53 MASHHQFSAVKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRKSHVGLSKAKVARDAVLRFRPHVSITSYHANVKNQEFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDSASSSNHAEDIFELYKDETIEQYGRRVFDHVFGYNIEVALSNDDTWKNRNKPRPIYSRDILPDEPTKQNGNSDKNCATDDQSSFSAMTSLGMKNPQEIWSLMENSRIFIEAIKLFFTKREKDVGNLTFDKDDQLAVEFVTAAANIRAESFGIPMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDANNYRMTYCLEHPSRKMLLMPVEPFEPNKSCYVCSETPLSLEINTHKAKLRDFVEKIVKVKLGMNFPLIMHGSALLYEVGDDLDEDMVANYAANLEKVLSEFPSPVVSGTILSVEDLQQELSCSINIKHRDEFDEEKEPDGMVLSGWHQTSLEKGDSSKTLGNGESISTPSATEADKNEDSDIVASGRKRKLDEAPSSAVDISSSANEANSLKKLEELDDDDDDDLVMLDDGDSAMNKKKRLQ 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3926872 3934851 + CmaCh20G008250.1 Cma20g00825 316639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00825 644 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 9 487 IPR035985 GO:0008641
Cma20g00825 644 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 163 374 IPR023318 -
Cma20g00825 644 MobiDBLite consensus disorder prediction 263 287 - -
Cma20g00825 644 Pfam ThiF family 8 433 IPR000594 -
Cma20g00825 644 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 3 556 IPR045886 -
Cma20g00825 644 MobiDBLite consensus disorder prediction 576 597 - -
Cma20g00825 644 MobiDBLite consensus disorder prediction 272 287 - -
Cma20g00825 644 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 3 556 - -
Cma20g00825 644 MobiDBLite consensus disorder prediction 552 644 - -
Cma20g00825 644 MobiDBLite consensus disorder prediction 552 575 - -
Cma20g00825 644 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 442 534 IPR028077 -
Cma20g00825 644 Gene3D - 1 108 IPR042449 -
Cma20g00825 644 CDD Uba2_SUMO 14 435 - -
Cma20g00825 644 PIRSF SUMO_E1B 1 626 IPR030661 GO:0016925|GO:0019948
Cma20g00825 644 Pfam Ubiquitin-activating enzyme, SCCH domain 291 369 IPR019572 -
Cma20g00825 644 Gene3D - 436 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00825 K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B [EC:6.2.1.45] - csv:101205378 1133.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00376 Cma20g00825 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00728 Cma-Chr2:4414687 Cma20g00825 Cma-Chr20:3926872 5.46E-08 dispersed
Cma06g01429 Cma-Chr6:9187689 Cma20g00825 Cma-Chr20:3926872 2.09E-07 dispersed
Cma13g00805 Cma-Chr13:6838153 Cma20g00825 Cma-Chr20:3926872 3.19E-14 dispersed
Cma14g01683 Cma-Chr14:12533541 Cma20g00825 Cma-Chr20:3926872 1.03E-08 dispersed
Cma16g00905 Cma-Chr16:6646511 Cma20g00825 Cma-Chr20:3926872 7.05E-18 dispersed
Cma18g00317 Cma-Chr18:1683788 Cma20g00825 Cma-Chr20:3926872 8.73E-14 dispersed
Cma20g00332 Cma-Chr20:1623010 Cma20g00825 Cma-Chr20:3926872 3.46E-07 dispersed
Cma20g00617 Cma-Chr20:2872826 Cma20g00825 Cma-Chr20:3926872 2.84E-06 dispersed
Cma02g00376 Cma-Chr2:1895077 Cma20g00825 Cma-Chr20:3926872 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00825 Cma_Chr20 FPKM 16.021303 16.264643 18.194508 19.285608 17.126444 16.755373 16.923687 18.353233 17.742216 19.040472