Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00829 ATGGGATCTGCGTGTTGTGTTGCTGCTAGGGAAAATACTATAGTTAGTGGATCTGGAAGTGAAACCTTATGTAGGAATATGAGGTATTCTCCTAGTTGGAGCTTTCGATGGGATAATCGTGGACGAGTAGCTGGCGAAGAGACTTCGATAAATTGGTTTTCTGATGGTGTTAGTCGCAATGATAGTCCACTTGAACATCTCCGTAGACGTACATGGCAAAAGTCTCCACCGCCAGAAGGCACAACTAATAATTTGAGGACTCCTAGTTCAGGTCAATCAAATTCACGGAATGTATCAACAGATGTGAGTTTAGAACAGGTGAAGGAGGCTATGGATTCTCCCACAGCCTCATATAAGTCTCCTGCAAAATTGTCACTTTCATTGCCTTCAACTTCATCTTTGTCAACCTCTCCTTTATCATCACAGAGCTATCTGCCTCCAACCAATTCATCCCTAACAAGATGTACCCATCGATCTCCAGGACATCAGCTGTTGCGTCAAGGTTCTGACAACCGAATCCGAGGATTAAAATCACCAGGTAGCTATTTAGCTTCTGAAGATAGACCAAGGCTTCCCTCTTGGAGCAACGAATCGGTCCGTGACTCACATGGAGGGTCTTCAGATTGTTGGTCTGTCCATGCTTTCTCTGAGCTCATGGCCACTTCTCATCGAGAAAGATGGTCTTTTGATAGCGACTCTTTCGGCTTTAACGGTGAGAAAATAGCCAGGTCTAGTAGTCGAATTTCAACCTCCTCAGTTGATTTGCAAACTTGCGGAGTTTGCTCAAAACTATTGACCGAGAAATCCTCATGGAGTAGCCAAAGGATCATTGCTAACAACGAGCTTTCTGTTGCTGCTGTACTAACCTGTGGACATGTTTATCATGCCGATTGCTTGGAGAGTATGACACCCGAGATTTACAAGTACGACCCGGCTTGTCCCGTTTGTACCTTCGGGGAGAAGCACACGCAGAAGCTGTCCGAAAAGGCGCTTAAAGCTGAAATGGACTGGAAGAGTCTATACAAGAGATCCAAAAACTGTAATGCAGATAGCCATTTTGAATCAAACAATCCTTTCAAAAACCATGCCCGTCTCGAAAAGGGCTCCAGAATGTCTGCGAGTTCTAGCACTAGAAGCTCCTCAGGAAAGCCGTTCTTAAAACGGCACTTCTCCTTCGGCTCGAAGGGATCTTCTAGAGTGATGTCTGATAATCATCACTCCACAAGAAGGAAAGGATTCTTCTGGGCAAAATCTAGCAAAGTATGA 1266 44.79 MGSACCVAARENTIVSGSGSETLCRNMRYSPSWSFRWDNRGRVAGEETSINWFSDGVSRNDSPLEHLRRRTWQKSPPPEGTTNNLRTPSSGQSNSRNVSTDVSLEQVKEAMDSPTASYKSPAKLSLSLPSTSSLSTSPLSSQSYLPPTNSSLTRCTHRSPGHQLLRQGSDNRIRGLKSPGSYLASEDRPRLPSWSNESVRDSHGGSSDCWSVHAFSELMATSHRERWSFDSDSFGFNGEKIARSSSRISTSSVDLQTCGVCSKLLTEKSSWSSQRIIANNELSVAAVLTCGHVYHADCLESMTPEIYKYDPACPVCTFGEKHTQKLSEKALKAEMDWKSLYKRSKNCNADSHFESNNPFKNHARLEKGSRMSASSSTRSSSGKPFLKRHFSFGSKGSSRVMSDNHHSTRRKGFFWAKSSKV 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3943916 3948897 - CmaCh20G008290.1 Cma20g00829 316643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00829 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 318 IPR013083 -
Cma20g00829 421 PANTHER EXPRESSED PROTEIN 1 415 - -
Cma20g00829 421 MobiDBLite consensus disorder prediction 354 387 - -
Cma20g00829 421 MobiDBLite consensus disorder prediction 75 106 - -
Cma20g00829 421 MobiDBLite consensus disorder prediction 191 205 - -
Cma20g00829 421 MobiDBLite consensus disorder prediction 68 206 - -
Cma20g00829 421 MobiDBLite consensus disorder prediction 368 384 - -
Cma20g00829 421 CDD RING-H2 283 316 - -
Cma20g00829 421 PANTHER BNAA09G43140D PROTEIN 1 415 - -
Cma20g00829 421 ProSiteProfiles Zinc finger RING-type profile. 258 317 IPR001841 -
Cma20g00829 421 MobiDBLite consensus disorder prediction 118 166 - -
Cma20g00829 421 SMART ring_2 258 316 IPR001841 -
Cma20g00829 421 SUPERFAMILY RING/U-box 257 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00829 - - - bhj:120088479 728.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00378 Cma20g00829 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00512 Cma-Chr10:2332069 Cma20g00829 Cma-Chr20:3943916 1.37E-12 dispersed
Cma11g00512 Cma-Chr11:2425382 Cma20g00829 Cma-Chr20:3943916 1.74E-12 dispersed
Cma18g01137 Cma-Chr18:9198406 Cma20g00829 Cma-Chr20:3943916 2.24E-16 dispersed
Cma02g00378 Cma-Chr2:1903314 Cma20g00829 Cma-Chr20:3943916 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g344 . . . . Bpe07g00416 . . Bma12g00499 . . Cma02g00378 Cma20g00829 Car02g00245 Car20g00714 Sed05g2310 . . Bhi05g01247 Tan02g0782 Cmetu01g1358 . . . . . . . . . . . . . . . Lsi10g00395 . Chy11g00356 . Blo04g00522 . Bda15g00059 . . . . . Sed01g0284 Cmo02g00384 . . . . . Cpe16g00260 Cpe05g01277 Bhi10g01975 Tan05g1268 Cmetu11g0620 . Hepe08g0995 . . . . . . . . . . Csa02g01285 . Cme11g00139
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00829 Cma_Chr20 FPKM 7.242454 8.169472 12.241015 12.731136 6.88645 6.951149 7.16215 15.713979 15.374413 16.679319
Cma20g00829 Cma_Chr00 FPKM 2.457806 4.311004 8.820755 10.167755 5.901033 4.01844 4.561533 6.738971 6.913581 6.684961