Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00831 ATGGTGAAGGAGACTGGTTATTATGATGTATTGGGTGTCAAATTCGATGCCTCCTCTGCAGAAATTAAGAAGGCATACTACGTTAAGGCAAGGCTAGTTCATCCAGATAAAAATCAAGGAGATCCGAAAGCGGCGGAAAATTTTCAGGTACTGGGAGAGGCTTATCAGGTATTGAGCGATCCCGAGAAGCGTGAAGCATACGACAAGTATGGGAAGGCAGGAGTACAACAGGACACCATGGTAGACCCTGCAGCTGTGTTCGGTATGCTGTTTGGAAGTGAGTTCTTTGAAGAGTATGTTGGTCAGCTTGCTTTGGCTGTTCTATCAACTTTCGAGATTGAGGAAGATTCACAAGACCCCGAGATACGCAAGCAAAAAATTCAGGAAAAGCTAAAGATATTTCAAAAGGAAAGGGAAGAAAAGCTTGCAAACATTTTGAAAGAGCGCCTCCAACCATATGTTGATGGTCGGGTTGATGAGTTTGTGACATGGGCAAGTTCAGAAGCACGACGACTCTCCAATGCTGCTTTTGGTGAGACCATGCTGCACACCATTGGATACATATACACAAGGAAAGCTGCGAAGGAACTTGGGAGGGACAGACGTTATATGAAAGTGCCGTTTTTAGCCGAGTGGGTGCGAGATAAAGGACACCAGATAAAATCACAAGTGATGGCAGCTTCAGGTGCTGTTTCTTTGATTCAATTACAGGAAGAGTTGAAGCGGCTGAATGAAGGAGATAACCGAGACGAGAACCTGGCAAAAGCCATTGAAGAGAAGAAAGATGCTGTTCTTAACTCACTTTGGCAGATTAATGTGGTCGACATCGAATCTACTCTGTCACGTGTCTGCTCTGTAGTTATTAGAGACCCCAGTGTGTCGAAAGACGTACTGAAGCTACGAGCCAGAGCCCTGAAGAAGTTAGGAGCGGTGTTCCAAGGTGCAAAGTCAGCTTACAGCAGAGAAAACAGCCTGAGGCATGAAAATGGTAAATCAATTGCTGTTGCTTCTTCAACTTCATGA 1023 44.87 MVKETGYYDVLGVKFDASSAEIKKAYYVKARLVHPDKNQGDPKAAENFQVLGEAYQVLSDPEKREAYDKYGKAGVQQDTMVDPAAVFGMLFGSEFFEEYVGQLALAVLSTFEIEEDSQDPEIRKQKIQEKLKIFQKEREEKLANILKERLQPYVDGRVDEFVTWASSEARRLSNAAFGETMLHTIGYIYTRKAAKELGRDRRYMKVPFLAEWVRDKGHQIKSQVMAASGAVSLIQLQEELKRLNEGDNRDENLAKAIEEKKDAVLNSLWQINVVDIESTLSRVCSVVIRDPSVSKDVLKLRARALKKLGAVFQGAKSAYSRENSLRHENGKSIAVASSTS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3960402 3965605 - CmaCh20G008310.1 Cma20g00831 316645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00831 340 Pfam X-domain of DnaJ-containing 135 322 IPR026894 -
Cma20g00831 340 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Cma20g00831 340 Coils Coil 124 144 - -
Cma20g00831 340 CDD DnaJ 7 60 IPR001623 -
Cma20g00831 340 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cma20g00831 340 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cma20g00831 340 PRINTS DnaJ domain signature 43 63 IPR001623 -
Cma20g00831 340 PRINTS DnaJ domain signature 63 82 IPR001623 -
Cma20g00831 340 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Cma20g00831 340 Gene3D DnaJ domain 1 86 IPR036869 -
Cma20g00831 340 SUPERFAMILY Chaperone J-domain 2 102 IPR036869 -
Cma20g00831 340 Pfam DnaJ domain 7 68 IPR001623 -
Cma20g00831 340 SMART dnaj_3 5 63 IPR001623 -
Cma20g00831 340 PANTHER BNAA01G05380D PROTEIN 1 328 - -
Cma20g00831 340 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00831 - - - cmax:111484267 648.662
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00379 Cma20g00831 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00005 Cma-Chr9:19368 Cma20g00831 Cma-Chr20:3960402 4.37E-131 dispersed
Cma20g00831 Cma-Chr20:3960402 Cma17g00938 Cma-Chr17:7023314 2.51E-15 dispersed
Cma02g00379 Cma-Chr2:1912741 Cma20g00831 Cma-Chr20:3960402 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g346 Blo02g00811 . . Bda08g00944 . . Bma05g00437 . . . Cma02g00379 Cma20g00831 Car02g00246 Car20g00716 . . . . . . . . . . . . . . . . . . Cone8ag1214 . . Lsi10g00394 . Chy11g00360 . . . . . . . . . . Cmo02g00386 Cmo20g00840 . . . . Cpe16g00258 Cpe05g01276 Bhi10g01979 Tan05g1273 . . Hepe08g0997 . . . . . . . . . . Csa02g01283 . Cme11g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 7 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00831 Cma_Chr20 FPKM 18.379658 18.311853 27.945225 26.547724 12.434168 9.786757 11.416489 13.699677 13.973311 14.172359