Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00834 ATGTCTGGACCATTGGATCGATTCGCCAGACCATGTTTTGAAGGGTTCTCTGGTAGTGATGAAAGAAAAGAAAGGAAATCTGATTTTGAAAACTCCGAGGATGAAAGAAGGACTAGAATTGGGTCTATAAAGAAGAAAGCTCTAAATGCATCTTCCAAATTTAAACATTCCCTCAAGAAGAAGAGCAGCAGGAGAAAAAGTGATGGTCGGGTCAGTTCTGTTTCTATTGAGGATGTCAGGGATGTTGATGAACTGCGGGCTGTTGATGCGTTTCGTCAAGCACTAATAATGGAGGAATTACTGCCTGAAAAACACGATGATTATCACATGATGTTGAGGTTTTTAAAAGCTCGGAAATTTGATATCGAAAAAGCTAAACATATGTGGGCTGATATGCTTAATTGGAGGAAGGAGTTTGGTGTTGACACAATAGGTGAAGATTTTGAATTCAAAGAGAAAAATGAAGTTCTGAGGTACTATCCTCATGGATATCATGGGGTGGATAAAGAAGGAAGACCTATTTATATTGAAAGGTTGGGAAAAGTGGATCCAAACAAACTTATGCAAGTGACGACCATGGACCGATATATAAAGTACCACGTACAAGAGTTTGAGAAAAGTTTTTCTATTAAGTTTCCAGCTTGTTCTATTGCTGCAAAGAGGCACATAGATTCAAGCACCACAATCTTAGATGTTCAAGGCGTGGGCCTTAAGAATTTCACGAAGTCTGCTAGGGAACTCATCATGCGGCTGCAGAAAGTTGATGGTGACAATTACCCGGAAACTCTCAGCCAAATGTACATAATCAATGCTGGTCCTGGATTCCGGATGCTATGGAACACCGTGAAGTCTTTCCTTGACCCCCGAACAACATCTAAAATTCATGTTCTCGGGAACAAGTATCAAAACAAATTACTTGAAGTAATTGATTCCAGTGAGTTGCCGGAATTTCTGGGTGGAAATTGTACCTGTGCAGATTCGGGGGGGTGTCTTCATTCAGACAAGGGGCCCTGGAGAAACCCAGAAATTTTGAAGATGATTCTTAATGGTGAAGCACGACAAGCCAGACAGGTTGTAAAAGTTCTAAATAGCGAGGGGAAGGTTGTTGCATATGCTAAACCACATTACCCAATGGTGAAAGGTAGCGATACATCCACTGCTGAGTCGGGATCTGAAGCTGAAGAGATCGCTTCTCCCAACGCAATGAAGAACTATTCTCATCTCCGTTTGACTCCTGTTCGAGAAGAAGCAAGAGTTGCTGGTAAAGGAGGCTTTGTTGCTACCTTCTCTGGGTATGATGAATATGTTCCCATGGTTGACAAAGCTGTTGATGCTGGATGGAAGAAGCAAGGTTCACTCCAACGTCCTAGCGCCTTTAAAGGGGTTCTTCCACTGCCTGATACTCGAAAAGCACCCGAAGCACTTCATACTCGAATGTTGGTAGTACTCATGGGGTTCTTCATAGCCATTTGGGCTTTCCTCCGTTCACTAGCATGCCGGATGAGTGGGAAGAAATTGTCTATGGGGAGTCGAAACACCCCAGAATTATTGTCCTCTGATCAAACAGCCACGGAGGAGAATCGCTCCCCTTCACCGATTGCTAAAGTTACGGAAGCAGAACTCCTCTCGAATCTAGTAAAGAGGCTGGGTGAGCTGGAGGAGAAGGTCGATACACTTCAATCGAAACCATCGGAAATGCCATACGAGAAAGAGGAACTATTAAATGCTGCTGTCTGCCGTGTCGATGCTTTAGAAGCAGAGCTGATTGCTACCAAGAAGGCTCTGCACGAAGCATTGATGAGGCAAGAAGAACTGCTCGCTTACATCGATAGCCAAGAGGAAGCGAAGTTGCGGAAAAAGAAATTTTGCTGGTAA 1875 43.52 MSGPLDRFARPCFEGFSGSDERKERKSDFENSEDERRTRIGSIKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVDELRAVDAFRQALIMEELLPEKHDDYHMMLRFLKARKFDIEKAKHMWADMLNWRKEFGVDTIGEDFEFKEKNEVLRYYPHGYHGVDKEGRPIYIERLGKVDPNKLMQVTTMDRYIKYHVQEFEKSFSIKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKVDGDNYPETLSQMYIINAGPGFRMLWNTVKSFLDPRTTSKIHVLGNKYQNKLLEVIDSSELPEFLGGNCTCADSGGCLHSDKGPWRNPEILKMILNGEARQARQVVKVLNSEGKVVAYAKPHYPMVKGSDTSTAESGSEAEEIASPNAMKNYSHLRLTPVREEARVAGKGGFVATFSGYDEYVPMVDKAVDAGWKKQGSLQRPSAFKGVLPLPDTRKAPEALHTRMLVVLMGFFIAIWAFLRSLACRMSGKKLSMGSRNTPELLSSDQTATEENRSPSPIAKVTEAELLSNLVKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALHEALMRQEELLAYIDSQEEAKLRKKKFCW 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3985464 3991424 + CmaCh20G008340.1 Cma20g00834 316648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00834 624 MobiDBLite consensus disorder prediction 16 42 - -
Cma20g00834 624 SMART sec14_4 152 323 IPR001251 -
Cma20g00834 624 SUPERFAMILY CRAL/TRIO N-terminal domain 83 147 IPR036273 -
Cma20g00834 624 Gene3D - 140 351 IPR036865 -
Cma20g00834 624 MobiDBLite consensus disorder prediction 507 531 - -
Cma20g00834 624 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 622 - -
Cma20g00834 624 MobiDBLite consensus disorder prediction 1 70 - -
Cma20g00834 624 Coils Coil 581 601 - -
Cma20g00834 624 MobiDBLite consensus disorder prediction 49 66 - -
Cma20g00834 624 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Cma20g00834 624 CDD SEC14 153 321 IPR001251 -
Cma20g00834 624 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Cma20g00834 624 Coils Coil 542 562 - -
Cma20g00834 624 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 3 622 - -
Cma20g00834 624 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Cma20g00834 624 Pfam CRAL/TRIO, N-terminal domain 103 131 IPR011074 -
Cma20g00834 624 Gene3D - 44 139 - -
Cma20g00834 624 SUPERFAMILY CRAL/TRIO domain 154 345 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00834 - - - cmo:103499694 1126.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma07g00466 Cma20g00834 CCT
Cma03g00721 Cma20g00834 CCT
Cma03g00721 Cma20g00834 ECH
Cma07g00466 Cma20g00834 ECH
Cma02g00383 Cma20g00834 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01045 Cma-Chr1:7708260 Cma20g00834 Cma-Chr20:3985464 6.78E-167 dispersed
Cma09g01044 Cma-Chr9:5419857 Cma20g00834 Cma-Chr20:3985464 5.30E-175 dispersed
Cma13g00319 Cma-Chr13:3692731 Cma20g00834 Cma-Chr20:3985464 8.16E-23 dispersed
Cma20g00834 Cma-Chr20:3985464 Cma20g00835 Cma-Chr20:3991867 0 tandem
Cma16g01141 Cma-Chr16:8766470 Cma20g00834 Cma-Chr20:3985464 4.48E-114 transposed
Cma17g01256 Cma-Chr17:8559576 Cma20g00834 Cma-Chr20:3985464 2.12E-169 transposed
Cma02g00383 Cma-Chr2:1934509 Cma20g00834 Cma-Chr20:3985464 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
Vvi4g1029 . . . . . . . . . . Cma03g00721 Cma07g00466 Car03g00661 Car07g00413 . Cpe19g00824 Cpe10g00635 Bhi03g00922 . . . . . . Cla01g01939 Cam01g2027 Cec04g1687 Cco04g1751 Clacu01g2050 Cmu01g1926 Cre04g1600 . . . . Lsi01g00646 . . Cme08g00885 . . . . . . . . Sed01g0289 Cmo03g00748 Cmo07g00464 . Cma20g00834 . . . . Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa06g03279 Chy02g00615 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00834 Cma_Chr20 FPKM 73.347275 82.232506 35.751282 38.525883 45.895512 40.203121 48.37957 37.265781 35.997044 39.890285