Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma20g00835 ATGTGTGACAACATGTCGTCCGATCCTTTCGACCGACCGGGTAAAGGAGCCAACGAAGTCGAGATGTCGGAGGAAGAGAGAAAGACAAGGCTAGCATCTCTTAAGCAAAAAGCAATCAACGCCTCAAACAAGTTCAGACATTCAATGAAGAAGAAAAGTAGAAGAAACAGCAGCAGAGTGATGTCAATTTCCATAGAAGACGACATCGACGCAGAGGAATTACAAGCAGTAGACGCCTTCCGCCAAGCTCTCATACTAGAAGAGCTCCTCCCTTCAAAACATGACGACCATCACATGATGCTCAGGTTCTTGCGAGCTAGAAAGTTCGACATCGACAAGTCAAAGCAAATGTGGTCGGACATGCTCCAATGGCGCAAAGAGTTCGGATCCGACACAATAATGGAGGACTTTGAATTCAAGGAGATAGACGACGTGTTGAAGTATTATCCACAAGGTCATCATGGAGTCGACAAAGATGGACGACCCGTGTACATCGAAAGGCTCGGGATGGTCGACTCGACCAAGCTCTTGGAAGTGACGACGATGGATAGATACGTGAATTACCATGTCCGTGAGTTCGAGAGGACCTTTGTTATGAAGTTCCCGGCTTGTTCAATTGCTGCTAAGAAGCATATTGATCAGAGCACGACCATCTTGGATGTCCAAGGCGTGGGACTCAAGAGCTTCAACAAATCTGCACGGGAACTCATCCAGAGGCTGCAGAAGGTTGATGGTGACAACTATCCTGAGACATTGAACAGAATGTTCATTATCAACGCTGGATCTGGATTCAGGCTTCTATGGAACACTGTGAAATCGTTTCTTGACCCAAAAACGACAGCTAAAATCAATGTTCTTGGCAATAAGTATCAGAGCAAATTGCTCGAGATCATCGATGCTAGTGAACTTCCCGAGTTTCTTGGAGGTTCTTGCACCTGCGCCGACAAGGGTGGCTGTATGAGATCCGACAAGGGACCATGGAACGACCCAGAAATCATTAAGATGGTTCAAAATGGTGAAGGAAAATGCAGGAGGAGGTCAGTATCCAACGTTGAAGAGAAGACCATTTCAGAAGATGACAACACGGCAACCAAGATAAGTGGTTCATCCAACTTAGAATCAGCTCCTGAGGAGGTGGCGGCGGCGGCGGCGGAGTCTTGCAGGTCCCCAAAGCAAGCAAAACCGTCCCCTGTTTCAGCAGCAGAGGAAGTTCAAATGGCGAAAAAGATGAATTGCGAGTATCAATATAACAAGTTCGTCCCTGTGGCCGATAACAACATGGATCAAAATTGGGCAATTTCAAATGAAAAATACAATTTATCCAAAGACCCATTTGCAGTGCATGAAAACTACAAAGTCCCAGATGGGTTCAGCAACAACCTAGTTGGAGGAATAATGGCTGTGGTAATGGGAATAGTGACAATGGTCCGGCTAACTAGAACCATGCCAAAGAAGCTCACAGAGGCAGCCATCTACAGCAGCACGGTCTACTACGACGGTTCGATGCCAAGACATCCAGCATTGCCGCCCCCCGCCGCCGTGCCTCTTAGCGACTACATGACAATGATGAAGCGCATGGCGGAGCTCGAAGAGAAGGTCAATGTCCTCAACATGAAACCGGCCGCCATGCCAGCTGATAAGGAGGAAATGCTCAACATTGCTTTGGGCAAAGTCGAAACTTTGGAACAAGAATTGCAAGAAACTAAAAAGGCGCTCGAGGAATCTCTTTCTCGAGCGGCCGAGCTCAGCAGCTACATCGAAAAGAAGAAGAAGAAGAAGATGATGGTGAACCCATTCCGCTGGGGAATGTGA 1812 47.35 MCDNMSSDPFDRPGKGANEVEMSEEERKTRLASLKQKAINASNKFRHSMKKKSRRNSSRVMSISIEDDIDAEELQAVDAFRQALILEELLPSKHDDHHMMLRFLRARKFDIDKSKQMWSDMLQWRKEFGSDTIMEDFEFKEIDDVLKYYPQGHHGVDKDGRPVYIERLGMVDSTKLLEVTTMDRYVNYHVREFERTFVMKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKSARELIQRLQKVDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPEFLGGSCTCADKGGCMRSDKGPWNDPEIIKMVQNGEGKCRRRSVSNVEEKTISEDDNTATKISGSSNLESAPEEVAAAAAESCRSPKQAKPSPVSAAEEVQMAKKMNCEYQYNKFVPVADNNMDQNWAISNEKYNLSKDPFAVHENYKVPDGFSNNLVGGIMAVVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMPRHPALPPPAAVPLSDYMTMMKRMAELEEKVNVLNMKPAAMPADKEEMLNIALGKVETLEQELQETKKALEESLSRAAELSSYIEKKKKKKMMVNPFRWGM 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3991867 3996483 - CmaCh20G008350.1 Cma20g00835 316649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma20g00835 603 MobiDBLite consensus disorder prediction 352 377 - -
Cma20g00835 603 MobiDBLite consensus disorder prediction 1 30 - -
Cma20g00835 603 PRINTS Cellular retinaldehyde-binding protein signature 99 121 - -
Cma20g00835 603 PRINTS Cellular retinaldehyde-binding protein signature 268 287 - -
Cma20g00835 603 Gene3D - 129 340 IPR036865 -
Cma20g00835 603 SMART sec14_4 141 312 IPR001251 -
Cma20g00835 603 SUPERFAMILY CRAL/TRIO N-terminal domain 67 137 IPR036273 -
Cma20g00835 603 Gene3D - 34 128 - -
Cma20g00835 603 SUPERFAMILY CRAL/TRIO domain 141 337 IPR036865 -
Cma20g00835 603 SMART CRAL_TRIO_N_2 96 121 IPR011074 -
Cma20g00835 603 Coils Coil 551 582 - -
Cma20g00835 603 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 19 595 - -
Cma20g00835 603 MobiDBLite consensus disorder prediction 14 30 - -
Cma20g00835 603 Pfam CRAL/TRIO domain 147 309 IPR001251 -
Cma20g00835 603 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 19 595 - -
Cma20g00835 603 Coils Coil 519 539 - -
Cma20g00835 603 Pfam CRAL/TRIO, N-terminal domain 93 120 IPR011074 -
Cma20g00835 603 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 141 315 IPR001251 -
Cma20g00835 603 CDD SEC14 142 309 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma20g00835 - - - csv:101214906 1025.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00384 Cma20g00835 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00383 Cma-Chr2:1934509 Cma20g00835 Cma-Chr20:3991867 0 dispersed
Cma02g00384 Cma-Chr2:1941775 Cma20g00835 Cma-Chr20:3991867 0 dispersed
Cma03g00721 Cma-Chr3:5812533 Cma20g00835 Cma-Chr20:3991867 0 dispersed
Cma07g00466 Cma-Chr7:2034957 Cma20g00835 Cma-Chr20:3991867 0 dispersed
Cma16g01141 Cma-Chr16:8766470 Cma20g00835 Cma-Chr20:3991867 2.89E-112 dispersed
Cma17g01256 Cma-Chr17:8559576 Cma20g00835 Cma-Chr20:3991867 2.47E-06 dispersed
Cma20g00834 Cma-Chr20:3985464 Cma20g00835 Cma-Chr20:3991867 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma20g00835 Cma_Chr20 FPKM 16.119329 15.235926 0.0 0.0 0.351415 0.285448 0.296054 0.0 0.0 0.0